View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_19 (Length: 572)
Name: NF8957_low_19
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 280 - 524
Target Start/End: Original strand, 1746634 - 1746878
Alignment:
| Q |
280 |
tctctaaattcattcattgttatggttacttgttttgcaagaaaagaatagctgcgctaatagggccaacaccaacactaacacatcataaaaccatcta |
379 |
Q |
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| T |
1746634 |
tctctaaattcattcattgttatggttacttgttttgcaagaaaacaatagctgcgctaatagggccaacaccaacactaacacatcataaaaccatcta |
1746733 |
T |
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| Q |
380 |
gtaaaaaccaagaactacactattaccccccaattttagtcctcaatcagcataacagcatcaccactacacccatgctagcaacagtcactgcagaagt |
479 |
Q |
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| T |
1746734 |
gtaaaaaccaagaactacactattaccccccaattttagtcctcaatcagcatgacagcatcaccactacacccatgctagcaacagtcactgcagaagt |
1746833 |
T |
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| Q |
480 |
agtcaagataacagattaaacatatacttttctaataccattgta |
524 |
Q |
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| T |
1746834 |
agtcaagataacagattaaacatatacttttctaataccattgta |
1746878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 1746430 - 1746584
Alignment:
| Q |
37 |
tagataatactctctcaagaaccactctaaaaataagtctccactgatgaccactcacaagatggcggcttaccattggcaaatgacctaattttctgat |
136 |
Q |
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| T |
1746430 |
tagataatactctctcaagcaccactctaaaaataagtctccactgatgaccactcacaagatggcggcttaccattggcaaatgacctaattttctgat |
1746529 |
T |
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| Q |
137 |
ggtgggcagtcgatgtgtccattgaaataatagttaaatatttagcagccctaat |
191 |
Q |
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| T |
1746530 |
ggtgggcagtcgatgtatccattgaaataatagttaaatatttagcagccctaat |
1746584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 550
Target Start/End: Original strand, 1747223 - 1747255
Alignment:
| Q |
518 |
cattgtactcgccttcgttttatggtcgaacct |
550 |
Q |
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| T |
1747223 |
cattgtactcgccttcgttttatggtcgaacct |
1747255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 1724853 - 1724929
Alignment:
| Q |
106 |
ttaccattggcaaatgacctaattttctgatggtgggca----gtcgatgtgtccattgaaataatagttaaatatt |
178 |
Q |
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| T |
1724853 |
ttaccactggcaaattacctaagtttctgacggtgggcaaatagtcaatatgtcaattgaaataatagttaaatatt |
1724929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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