View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_low_2 (Length: 1023)
Name: NF8957_low_2
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 16 - 1005
Target Start/End: Original strand, 42823974 - 42824954
Alignment:
| Q |
16 |
agagacaccagcaccacaccaaaccatagagtcaaaaaaggtgtgtcttctaacattatgtaaatttggatg----------tattatatatcttaatta |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42823974 |
agaggcaccagcaccacaccaaaccatagagtcaaaaaaggtgtgtcttctaacattatgtaaatttggatgcattgtattgtattatatatcttaatta |
42824073 |
T |
|
| Q |
106 |
acatataaataaatagttgaattttaaatgaagtcagagaaaatgaaagaagtggtatnnnnnnnnnnnnnnnnnagagatattgggataagcagcaaca |
205 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42824074 |
acatataaatac----ttgaattttaaatgaagtcggagaaaatgaaagaagtggtatatgatgatgat------agagatattgggataagcagcaaca |
42824163 |
T |
|
| Q |
206 |
agatagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824164 |
agatagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatca |
42824263 |
T |
|
| Q |
306 |
tttgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824264 |
tttgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaatt |
42824363 |
T |
|
| Q |
406 |
attaattatccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824364 |
attaattatccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatt |
42824463 |
T |
|
| Q |
506 |
tcattattattaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824464 |
tcattattattaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaa |
42824563 |
T |
|
| Q |
606 |
aatggataa-nnnnnnnnnnnnngaaagagaaattatgaagnnnnnnntattgacgaaaaaagaacatttaattctaataattttactagtgtgagatgc |
704 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42824564 |
aatggataattttttttttttttgaaagagaaattatgaagaaaaaaatattgacgaaaaaagaacattcaattctaataattttactagtgt------- |
42824656 |
T |
|
| Q |
705 |
tggccactacgtcactttgacaaaagnnnnnnntacaatacctaccgttactaatatatgatgtaaaactacaaataatgcttataaaaagtgacaggga |
804 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824657 |
aggccactacgtcactttgacaaaagaaaaaaatacaatacctaccgttactaatat---atgtaaaactacaaataatgcttataaaaagtgacaggga |
42824753 |
T |
|
| Q |
805 |
gtaccaattatcagttatgagatcattctctattttttcattaaactaaaacataacaaatttcatacattgaacatagtcctagacatacaacacttca |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824754 |
gtaccaattatcagttatgagatcattctctattttatcattaaactaaaacataacaaatttcatacattgaacatagtcctagacatacaacacttca |
42824853 |
T |
|
| Q |
905 |
ttcaaatatcaacnnnnnnncaatcatattgatgttatcatgataaagtgaaaactacttgtgtcaccacatattaacatcacaaggccacaacacttgg |
1004 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42824854 |
ttcaaatatcaataaaaaaacaatcatattgatgttatcatgataaagtgaaaactacttgtgtcaccacatattaacatcgcaaggccacaacacttgg |
42824953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 864 - 1005
Target Start/End: Original strand, 42829522 - 42829664
Alignment:
| Q |
864 |
atttcatacattgaacatagtcctagacatacaacacttcattcaaatatcaacnnnnnnncaatcatattgatgttatcatgat--aaagtgaaaacta |
961 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| |||| || ||||||||| |||||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
42829522 |
atttcatacattgaacttagtcacaaacatacaacaattcaatccaatatcaacaaaaat-caatcagattgatgttatcatgctcaaaaatgaaaacta |
42829620 |
T |
|
| Q |
962 |
cttgtgtcaccacatattaacatcacaaggccacaacacttggt |
1005 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
42829621 |
cttgtgtcactatatattaacatcacaaggccacaacacttggt |
42829664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 6026272 - 6026331
Alignment:
| Q |
318 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
377 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
6026272 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
6026331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 6026174 - 6026247
Alignment:
| Q |
208 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaag |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||| ||| |||||||||||| | |||||| ||||| |
|
|
| T |
6026174 |
atagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaag |
6026247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University