View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_27 (Length: 503)
Name: NF8957_low_27
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 417748 - 418234
Alignment:
| Q |
1 |
caagctgactgcaaacaatactttccattctcttttgtaacagtattttgctctcaagttttaattatccacatgactggtctcttttcatcacaaacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
417748 |
caagctgactgcaaacaatactttccattctcttttgtaacagtatttttctctcaagttttaattatccacatgactggtctcttttcatcacaaacaa |
417847 |
T |
|
| Q |
101 |
atatattcagcttcctacagtacgcttatttcacatgctcagatcatgctatattcccttttataaccaagccttttccatcaattcttcaacactactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
417848 |
atatattcagcttcctacagtacgcttatttcacatgctcagatcatgctatattcccttttttaaccaagccttttccatcaattcttcaacactactc |
417947 |
T |
|
| Q |
201 |
cagtccaaattcaccttcactctatatgatgttcctgggtatgccctattctcttgtcaacctgcttcacactcgtacagtaaggtacaaacacttttac |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
417948 |
cggtccaaattcaccttcactctatatgatgttcctgggtatgccctattctcttgtcaacctgcttcacactcgtacagtaaggtacaaacacttttac |
418047 |
T |
|
| Q |
301 |
aacttacccaccgccattcaaccccatgcaaatcaaaggattatcacaccattgtgtaaggtcacatccaaaacctttgatctttgcatttagccactcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
418048 |
aacttacccaccgccattcaaccccatgcaaatcaaaggattatcacaccattgtgtaaggtcacatccaaaacctttgatctttgcatttagccactcc |
418147 |
T |
|
| Q |
401 |
acacacttacttccgctctttccactattataaaaatctgcattgatatatacattagttgatttaaggagtgtttggcatccttct |
487 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
418148 |
acacacttacttctgctctttccactattataaaaatctgcattgatatatacattagttgatttaaggaatgtttggcatccttct |
418234 |
T |
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