View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_28 (Length: 497)
Name: NF8957_low_28
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 54032174 - 54032644
Alignment:
| Q |
19 |
ttgtatttgcagcaattttagggtaattgctctacaaaaattaatactcctgtggattaaactaatatgcctagttatactaatatttgttttgtttact |
118 |
Q |
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| T |
54032174 |
ttgtatttgcagcaattttagggtaattgctctacaaaaattaatactcctgtggattaaactaatatgcctagttatactaatatttgttttgtttact |
54032273 |
T |
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| Q |
119 |
taaaattcaatgaatgacatt---ttctggtgtttgaatgattagatttgagaaaatcaatcttcgaagtttaagaaacgtggcaaagatattaggaaca |
215 |
Q |
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| T |
54032274 |
taaaattaaatgaatgacattattttctggtgtttgaatgattagatttgagaaaatcaatcttcgaagtttaagaaacgtggcaaagatattaggaaca |
54032373 |
T |
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| Q |
216 |
atatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttacatatggagtactttcttcctgattccaaacatctcactgcaa |
315 |
Q |
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| T |
54032374 |
atatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttacatatggagttctttcttcctgattccaaacatctcactgcaa |
54032473 |
T |
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| Q |
316 |
gtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaacca |
415 |
Q |
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| T |
54032474 |
gtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaacca |
54032573 |
T |
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| Q |
416 |
gaattaataatcttttaggtgacaagattattattcatcaatggacatttgattaaaatttcaacacaggt |
486 |
Q |
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| T |
54032574 |
gaattaataatcttttaggtgacaagattattattcatcaatggacatttgattaaaatttcaacacaggt |
54032644 |
T |
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