View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8957_low_3 (Length: 966)

Name: NF8957_low_3
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8957_low_3
NF8957_low_3
[»] chr6 (7 HSPs)
chr6 (571-949)||(15092634-15093012)
chr6 (244-543)||(15092162-15092462)
chr6 (118-244)||(14543907-14544033)
chr6 (1-117)||(15092043-15092159)
chr6 (361-443)||(11637867-11637949)
chr6 (365-425)||(28940923-28940983)
chr6 (354-443)||(7301446-7301535)
[»] scaffold0002 (1 HSPs)
scaffold0002 (118-244)||(168886-169012)
[»] chr7 (17 HSPs)
chr7 (118-244)||(6931359-6931485)
chr7 (323-427)||(8802385-8802488)
chr7 (309-440)||(11776213-11776337)
chr7 (9-114)||(35589774-35589879)
chr7 (47-111)||(7631012-7631076)
chr7 (9-112)||(7631268-7631372)
chr7 (47-112)||(2463475-2463540)
chr7 (401-438)||(31412492-31412529)
chr7 (16-112)||(11776410-11776506)
chr7 (359-449)||(23578144-23578234)
chr7 (371-428)||(2463096-2463153)
chr7 (9-94)||(23578085-23578170)
chr7 (372-445)||(24619700-24619773)
chr7 (355-428)||(23626633-23626707)
chr7 (374-416)||(35589602-35589644)
chr7 (370-443)||(27597924-27597997)
chr7 (9-114)||(45100176-45100281)
[»] chr5 (7 HSPs)
chr5 (118-244)||(5569555-5569681)
chr5 (118-244)||(26290030-26290156)
chr5 (164-244)||(21374424-21374504)
chr5 (354-443)||(41341378-41341468)
chr5 (371-429)||(14168873-14168931)
chr5 (9-74)||(26420849-26420914)
chr5 (59-112)||(27856171-27856224)
[»] chr4 (21 HSPs)
chr4 (118-244)||(507409-507535)
chr4 (118-244)||(18041094-18041221)
chr4 (315-443)||(47680796-47680925)
chr4 (118-190)||(26394637-26394709)
chr4 (357-443)||(51681464-51681550)
chr4 (356-448)||(32864602-32864694)
chr4 (354-427)||(47681079-47681154)
chr4 (35-116)||(26473662-26473742)
chr4 (19-112)||(47680623-47680716)
chr4 (359-443)||(10396344-10396428)
chr4 (368-428)||(2917301-2917361)
chr4 (60-116)||(8445898-8445954)
chr4 (358-410)||(51681177-51681229)
chr4 (323-436)||(8445753-8445860)
chr4 (353-428)||(47680536-47680617)
chr4 (354-443)||(34946257-34946346)
chr4 (372-424)||(11307744-11307796)
chr4 (36-116)||(33339020-33339100)
chr4 (17-112)||(11307353-11307448)
chr4 (354-421)||(26473478-26473545)
chr4 (378-443)||(47680316-47680382)
[»] chr3 (17 HSPs)
chr3 (118-244)||(17222727-17222853)
chr3 (118-244)||(21595970-21596096)
chr3 (315-443)||(40195966-40196095)
chr3 (16-116)||(43481587-43481687)
chr3 (322-416)||(23162077-23162170)
chr3 (355-443)||(54017694-54017783)
chr3 (354-443)||(16143361-16143450)
chr3 (17-112)||(43978638-43978733)
chr3 (323-443)||(17732050-17732169)
chr3 (323-443)||(19033281-19033400)
chr3 (39-112)||(40195883-40195956)
chr3 (56-117)||(53595999-53596060)
chr3 (56-117)||(53596314-53596375)
chr3 (368-428)||(43978737-43978796)
chr3 (65-112)||(40196174-40196221)
chr3 (368-414)||(16869689-16869735)
chr3 (271-333)||(23162309-23162371)
[»] chr1 (11 HSPs)
chr1 (354-443)||(43834418-43834507)
chr1 (354-443)||(31973481-31973570)
chr1 (48-112)||(6182403-6182467)
chr1 (36-117)||(12466302-12466383)
chr1 (65-112)||(4392255-4392302)
chr1 (9-112)||(43834487-43834590)
chr1 (59-112)||(11199965-11200018)
chr1 (36-112)||(26231718-26231792)
chr1 (244-296)||(31973338-31973390)
chr1 (17-112)||(15327856-15327951)
chr1 (310-395)||(4392097-4392181)
[»] chr8 (9 HSPs)
chr8 (9-112)||(2954571-2954674)
chr8 (368-443)||(2954371-2954446)
chr8 (17-112)||(5981505-5981600)
chr8 (343-443)||(5981588-5981689)
chr8 (15-93)||(2954307-2954385)
chr8 (117-174)||(35705162-35705219)
chr8 (36-112)||(5981797-5981872)
chr8 (15-112)||(5072979-5073077)
chr8 (17-106)||(14028325-14028414)
[»] chr2 (11 HSPs)
chr2 (9-112)||(19548136-19548239)
chr2 (361-443)||(44981908-44981991)
chr2 (354-416)||(40053375-40053437)
chr2 (354-422)||(11727813-11727881)
chr2 (56-116)||(40053201-40053261)
chr2 (372-443)||(19548086-19548156)
chr2 (401-440)||(40732612-40732651)
chr2 (60-112)||(10066574-10066626)
chr2 (401-449)||(33562703-33562751)
chr2 (9-99)||(35027895-35027985)
chr2 (11-112)||(34217532-34217632)
[»] scaffold0548 (1 HSPs)
scaffold0548 (372-424)||(4234-4286)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 571 - 949
Target Start/End: Original strand, 15092634 - 15093012
Alignment:
Q  571 tactttaaggctgtgatgagttactagtacaggtgaggtactgatctcacgagtgttattcggctggcaatataattaagtcctgcttttacataacagc 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092634 tactttaaggctgtgatgagttactagtacaggtgaggtactgatctcacgagtgttattcggctggcaatataattaagtcctgcttttacataacagc 15092733  T
Q  671 tttaacacaaagctgctttctgtttgattactcagttttatttcagccttatttctaaaaattagcaaatgtcagatatcagattctcatattccagcta 770  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092734 tttaacacaaagctgctttctgtttgattactcagtttcatttcagccttatttctaaaaattagcaaatgtcagatatcagattctcatattccagcta 15092833  T
Q  771 tatctccatccatgcacttgtcacacatatcagaccaaaagctacttttttcactatactatttttccatttccctaaaatattctgtgtatatttggta 870  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15092834 tatctccatccatgcacttgtcacacatatcagaccaaaagctacttttttcactatactatttttccatttccctataatattctgtgtatatttggta 15092933  T
Q  871 ttggttttagaaattcttaaatttgattctaaaattggaaaactggaattgacatgttatcatgtagccatcaaaaatg 949  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15092934 ttggttttagaaattcttaaatttgattctaaaattggaaaactggaattgacatgttatcatgtagccataaaaaatg 15093012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 244 - 543
Target Start/End: Original strand, 15092162 - 15092462
Alignment:
Q  244 agtgtgatgtctctctcttaacggattcttgatgtttagtccactgccgctcctagagctttccagactcgccaacaactggtatcagagtcatggttaa 343  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  15092162 agtgtgatgtctctctcttagcgggttcttgatgtttagtccactgccgctcctagcgctttccagactccccaacaactggtatcagagccatggttaa 15092261  T
Q  344 ggctcggtatgg-agcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagt 442  Q
    ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  15092262 ggctcggtacgggagcgggagtgggatcctagtgtggatcagactagtaatgttggtgactcacacttgaggggaagattgttggatttcaagattgagt 15092361  T
Q  443 gtttaagagatgagactgatataccgaatgtcttaaaatttttgatagatatgtgatgtcttaatctcttaatggtcctagacgtttttcccattaccgc 542  Q
    | ||||||||||||||| ||||||| ||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  15092362 gattaagagatgagactcatatacctaatatcttaaggtttttgataaatatgtgatgtcttaatctcttaatggtcctagacgttttgtccattaccgc 15092461  T
Q  543 t 543  Q
    |    
T  15092462 t 15092462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 14544033 - 14543907
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14544033 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 14543934  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  14543933 taaatctataggacatacacgaacaca 14543907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 15092043 - 15092159
Alignment:
Q  1 ttatttacgttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatg 100  Q
    ||||||| |||| ||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  15092043 ttatttatgttgaatttcaagtgtgagtggttaaataccacatcgattagaaattgagaaaatgttggatatatacgagaggggatccatatacctgatg 15092142  T
Q  101 ccttaaggttttaggta 117  Q
    | |||||||||||||||    
T  15092143 ctttaaggttttaggta 15092159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 11637949 - 11637867
Alignment:
Q  361 gagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||||| |||||  |||||||||  ||||| |||| | ||| |||||||||||||||||||||||| |  |||||||||||||    
T  11637949 gagtgggatccttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaaaatcaagtgtgagtg 11637867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 28940983 - 28940923
Alignment:
Q  365 ggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgtt 425  Q
    |||||||||||||| |||||||||||||||| ||| ||||| |||||| |||  |||||||    
T  28940983 ggaatcctagtgtgaatcaggctagtaatgtgggtaactcatacttgacggggggattgtt 28940923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 7301535 - 7301446
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||| ||||| || |||||| |||||||||||||||| |||| ||||| ||||| |||||| | | ||||||| |  | |||||||||||    
T  7301535 ggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcacagttgaggaggatattgttgaaaattaagtgtgagtg 7301446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 123; Significance: 1e-62; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 169012 - 168886
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  169012 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 168913  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  168912 taaatctataggacatacacgaacaca 168886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 1e-62; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 6931485 - 6931359
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6931485 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 6931386  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  6931385 taaatctataggacatacacgaacaca 6931359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 323 - 427
Target Start/End: Original strand, 8802385 - 8802488
Alignment:
Q  323 tggtatcagagtcatggttaaggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagatt 422  Q
    ||||||||||| |||||||| ||||| ||  |||||||||| || |||||||| |||||||||||||| |||| | ||| ||||||||||||| ||||||    
T  8802385 tggtatcagagccatggtta-ggctcagtggggagcgggagcgggatcctagtatggatcaggctagtgatgtggctgattcacacttgagggaaagatt 8802483  T
Q  423 gttgg 427  Q
    |||||    
T  8802484 gttgg 8802488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 309 - 440
Target Start/End: Complemental strand, 11776337 - 11776213
Alignment:
Q  309 gactcgccaacaactggtatcagagtcatggttaaggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacac 408  Q
    ||||| ||||||||||||||||||  | |||||| ||||||||  |||||||||      |||||| ||||||||||||||| |||| ||||||||| ||    
T  11776337 gactccccaacaactggtatcagaaccctggtta-ggctcggtggggagcggga------tcctagcgtggatcaggctagtgatgtgggtgactcatac 11776245  T
Q  409 ttgaggggaagattgttggatttcaagtgtga 440  Q
    |||||||| ||||||||||  |||||||||||    
T  11776244 ttgagggggagattgttgggattcaagtgtga 11776213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 35589879 - 35589774
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaagg 108  Q
    ||||| |||||||||||||||  ||  || ||||||||||||||||||  |||||||||||||||||  ||||||||  ||||| | ||||||||||||     
T  35589879 gttgggtttcaagtgtgagtgattatgtctcacatcaattaggaattgcaaaaatgttggatatataaaagaggagatacatatgcgtgatgccttaaga 35589780  T
Q  109 ttttag 114  Q
    ||||||    
T  35589779 ttttag 35589774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 7631012 - 7631076
Alignment:
Q  47 ttaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttt 111  Q
    |||||||  |||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||    
T  7631012 ttaggaaaggagaaaatgtcggatatataagagatgagacccatgtacctgatgccttaaggttt 7631076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7631372 - 7631268
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggaga-cccatatacctgatgccttaag 107  Q
    ||||| |||||||||||||| | ||| ||||||||| | |   ||| |||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||    
T  7631372 gttgggtttcaagtgtgagtagttaagtcccacatcgactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaag 7631273  T
Q  108 gtttt 112  Q
     ||||    
T  7631272 ctttt 7631268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 2463475 - 2463540
Alignment:
Q  47 ttaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||| ||| ||| |||| ||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  2463475 ttagaaatggaggaaatattggatatataagagaggggacacatatacctgatgccttaaggtttt 2463540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 31412492 - 31412529
Alignment:
Q  401 actcacacttgaggggaagattgttggatttcaagtgt 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31412492 actcacacttgaggggaagattgttggatttcaagtgt 31412529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 11776506 - 11776410
Alignment:
Q  16 ttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    ||||||||||||||  ||  ||||||||||| ||||||| ||| |||  ||| ||||||| |||||| ||||||||||| | || ||||||||||||    
T  11776506 ttcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatataagagaggggacccatatacataataccttaaggtttt 11776410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 359 - 449
Target Start/End: Complemental strand, 23578234 - 23578144
Alignment:
Q  359 gggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtgtttaag 449  Q
    ||||| || ||||||| ||| ||||||||||| || | ||| ||||| |||||||| | |||||||||| ||||| ||||||||| |||||    
T  23578234 gggagcgggatcctagcgtgaatcaggctagtgatatgggtcactcaaacttgaggcggagattgttgggtttcatgtgtgagtgattaag 23578144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 2463096 - 2463153
Alignment:
Q  371 ctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttgga 428  Q
    |||| |||||||||| |||| |||| |||||||||||||| ||| |||||||||||||    
T  2463096 ctagcgtggatcaggttagtgatgtgggtgactcacactttaggagaagattgttgga 2463153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 23578170 - 23578085
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatac 94  Q
    ||||| ||||| |||||||||  ||| ||||||||| | ||| ||| ||||||| |||||||||||| |||||| ||| |||||||    
T  23578170 gttgggtttcatgtgtgagtgattaagtcccacatcgagtagaaatggagaaaacgttggatatataagagaggtgacacatatac 23578085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 24619773 - 24619700
Alignment:
Q  372 tagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtgtt 445  Q
    |||||||||||| | |||| |||| ||||||||||||||| |   |||||||||| | ||||||||||||||||    
T  24619773 tagtgtggatcaagttagtgatgtgggtgactcacacttgtgccaaagattgttgaagttcaagtgtgagtgtt 24619700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 23626633 - 23626707
Alignment:
Q  355 gagcgggagtggaatcctagtgtggatcagg-ctagtaatgttggtgactcacacttgaggggaagattgttgga 428  Q
    |||||| | ||| ||||||| |||||||| | ||||| ||||| |||||||| ||||||| ||||||||||||||    
T  23626633 gagcggaaatgggatcctagcgtggatcaagtctagtgatgtttgtgactcatacttgagtggaagattgttgga 23626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 35589644 - 35589602
Alignment:
Q  374 gtgtggatcaggctagtaatgttggtgactcacacttgagggg 416  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  35589644 gtgtggattaggctagtgatgtgggtgactcacacttgagggg 35589602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 27597924 - 27597997
Alignment:
Q  370 cctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    ||||||||||||||  ||||| |||| ||||| |||||||||| ||  |||| ||||||  |||||||||||||    
T  27597924 cctagtgtggatcatcctagtgatgtgggtgagtcacacttgaaggagagatcgttggaaatcaagtgtgagtg 27597997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 45100176 - 45100281
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaagg 108  Q
    ||||| |||||||||||||||  ||  | ||||||  | |||||||| ||||||||||| ||||||| |||||  ||| |||||| || ||| ||||| |    
T  45100176 gttgggtttcaagtgtgagtgattatgttccacattgactaggaattaagaaaatgttgaatatataagagagatgactcatataactaatgtcttaaag 45100275  T
Q  109 ttttag 114  Q
    ||||||    
T  45100276 ttttag 45100281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 1e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 5569555 - 5569681
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5569555 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 5569654  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  5569655 taaatctataggacatacacgaacaca 5569681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 26290156 - 26290030
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  26290156 caatacagttaccacaaaaaatacagatttcgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccaatttccaatcaacaacggg 26290057  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  26290056 taaatctataggacatacacgaacaca 26290030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 21374424 - 21374504
Alignment:
Q  164 atttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacgggtaaatctataggacatacacgaacaca 244  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21374424 atttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacgggtaaatctataggacatacacgaacaca 21374504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 41341378 - 41341468
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggat-ttcaagtgtgagtg 443  Q
    |||||| ||| || ||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||| |||| |  |||||||||||||    
T  41341378 ggagcgagagcgggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgggtaatcaagtgtgagtg 41341468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 14168873 - 14168931
Alignment:
Q  371 ctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggat 429  Q
    ||||||||||||| |||||| |||| | ||| ||| |||||||||| ||||||||||||    
T  14168873 ctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattgttggat 14168931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26420914 - 26420849
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatat 74  Q
    |||||| ||||||||||||| | ||| ||||||||| | ||| ||| ||| |||||||||||||||    
T  26420914 gttggaattcaagtgtgagtagttaagtcccacatcgactagaaatggaggaaatgttggatatat 26420849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 27856171 - 27856224
Alignment:
Q  59 aaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    ||||||||||||||||| |||||| | | ||||||||| ||||||||| |||||    
T  27856171 aaaatgttggatatataagagaggtggctcatatacctaatgccttaaagtttt 27856224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 507535 - 507409
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  507535 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 507436  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  507435 taaatctataggacatacacgaacaca 507409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 18041094 - 18041221
Alignment:
Q  118 caatacagttaccacaaaaaat-acagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacgg 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18041094 caatacagttaccacaaaaaattacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacgg 18041193  T
Q  217 gtaaatctataggacatacacgaacaca 244  Q
    ||||||||||||||||||||||||||||    
T  18041194 gtaaatctataggacatacacgaacaca 18041221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 315 - 443
Target Start/End: Original strand, 47680796 - 47680925
Alignment:
Q  315 ccaacaactggtatcagagtcatggttaaggctcggtatgg-agcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgag 413  Q
    ||||||||||||||||||| | |||||| ||||| ||  || ||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||    
T  47680796 ccaacaactggtatcagagccctggtta-ggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacacttgag 47680894  T
Q  414 gggaagattgtt-ggatttcaagtgtgagtg 443  Q
    ||| |||||||| |||  |||||||||||||    
T  47680895 ggggagattgttgggaaatcaagtgtgagtg 47680925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 26394637 - 26394709
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatc 190  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||||||    
T  26394637 caatacagttaccacaaaaaatacaaatttcgaaatcaatactgtaatttagcaactgtttctttcgaatatc 26394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 51681464 - 51681550
Alignment:
Q  357 gcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||||||||  |||||| |||||||||||| ||| |||| ||||||||||||||||||| ||||||| ||| |||||||||| ||||    
T  51681464 gcgggagtgagatcctaatgtggatcaggccagtgatgtgggtgactcacacttgagggaaagattgctgggtttcaagtgtaagtg 51681550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 356 - 448
Target Start/End: Original strand, 32864602 - 32864694
Alignment:
Q  356 agcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtgtttaa 448  Q
    ||||||||||  ||||||||||||||||| ||||  |||| | ||||||||| |||||||||| ||||||||| | |||||||||||| ||||    
T  32864602 agcgggagtgagatcctagtgtggatcagactagcgatgtggatgactcacaattgaggggaaaattgttggaatgcaagtgtgagtggttaa 32864694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 47681079 - 47681154
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgact--cacacttgaggggaagattgttgg 427  Q
    ||||||||||||| ||||||||| ||||||||||||| |||| |||||||  ||||||||||||| ||||||||||    
T  47681079 ggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactaacacacttgagggggagattgttgg 47681154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 26473742 - 26473662
Alignment:
Q  35 atcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggt 116  Q
    |||||||||| ||||||||| |||||||  ||||||||||| |||||| ||| |||||||||||||  ||||||||||||||    
T  26473742 atcccacatcgattaggaatggagaaaacattggatatataagagagg-gactcatatacctgatgttttaaggttttaggt 26473662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 47680623 - 47680716
Alignment:
Q  19 aagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||  ||  ||||||||| ||||  ||| ||| |||  ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  47680623 aagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaatatatatgagaggagacccatatacctgatgccttaaggtttt 47680716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 359 - 443
Target Start/End: Original strand, 10396344 - 10396428
Alignment:
Q  359 gggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||||||| ||||||||||||||||  ||||| |||| || || ||| |||||||||| |||||||||||  |||||||||||||    
T  10396344 gggagtgggatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgttggaaatcaagtgtgagtg 10396428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 2917361 - 2917301
Alignment:
Q  368 atcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttgga 428  Q
    |||| ||||||||| || ||||| |||| ||||| ||||||||||||||||||||||||||    
T  2917361 atccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttgga 2917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 8445898 - 8445954
Alignment:
Q  60 aaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggt 116  Q
    |||||||||||||||| |||||  ||| ||||||| |||||||||||||||||||||    
T  8445898 aaatgttggatatataagagagaggacacatatacatgatgccttaaggttttaggt 8445954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 51681177 - 51681229
Alignment:
Q  358 cgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacactt 410  Q
    ||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||    
T  51681177 cgggagttgaatccttgtgtggatcaggctagtgatgtgggtgactcacactt 51681229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 323 - 436
Target Start/End: Original strand, 8445753 - 8445860
Alignment:
Q  323 tggtatcagagtcatggttaaggctcggtatgg-agcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagat 421  Q
    ||||||||||| | |||||| ||||||||  || ||||||||||| ||||||||||||||      ||| |||| ||||| |||||||||||||| ||||    
T  8445753 tggtatcagagccctggtta-ggctcggtggggtagcgggagtgggatcctagtgtggat------agtgatgtgggtgaatcacacttgagggggagat 8445845  T
Q  422 tgttggatttcaagt 436  Q
    |||||| ||||||||    
T  8445846 tgttgggtttcaagt 8445860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 47680536 - 47680617
Alignment:
Q  353 tggagcgggagtggaatcctagtgtggatcaggctagta------atgttggtgactcacacttgaggggaagattgttgga 428  Q
    |||||||||||| | ||||||||| |||||| |||||||      || | ||||||||||||||||||||||||||||||||    
T  47680536 tggagcgggagtaggatcctagtgaggatcatgctagtactagtgatatgggtgactcacacttgaggggaagattgttgga 47680617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 34946346 - 34946257
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||| |||| ||| ||| |||| |||||||  ||||| |||| ||||| ||||||||||| || |||||||||||  |||||||||||||    
T  34946346 ggagtgggactgggatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttggaaatcaagtgtgagtg 34946257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 11307796 - 11307744
Alignment:
Q  372 tagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgt 424  Q
    |||||||||||| |||||| |||| | ||||||||| ||||||||||||||||    
T  11307796 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgt 11307744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 33339020 - 33339100
Alignment:
Q  36 tcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggt 116  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| ||||||| |  ||||||||| ||  ||| |||||||||||    
T  33339020 tcccacatcaactaggaatggagagaatgttgaatatatatgagaggatattcatatacctaatttcttgaggttttaggt 33339100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 11307448 - 11307353
Alignment:
Q  17 tcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||| || |||  || |||||||| ||| ||| ||| |||  ||||||||||| |||||| ||| | ||||||||||||||||| |||||    
T  11307448 tcaagtgtgactgactatgtctcacatcaactagaaatggaggaaaccttggatatataagagaggggacacgtatacctgatgccttaatgtttt 11307353  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 26473545 - 26473478
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagat 421  Q
    |||||||||| || ||||| || |||||||||| ||| |||| ||||||||||| |||||||| ||||    
T  26473545 ggagcgggagcgggatccttgtctggatcaggcaagtgatgtgggtgactcacaattgagggggagat 26473478  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 47680316 - 47680382
Alignment:
Q  378 ggatcaggctagtaatgttggtgactcacacttgaggggaagattgtt-ggatttcaagtgtgagtg 443  Q
    ||||||||||| | |||| ||||||||||| |||||||| |||||||| |||  |||||||||||||    
T  47680316 ggatcaggctaatgatgtgggtgactcacagttgagggggagattgttgggaaatcaagtgtgagtg 47680382  T

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Target: chr3 (Bit Score: 123; Significance: 1e-62; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 17222727 - 17222853
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17222727 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 17222826  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    |||||||||||||||||||||||||||    
T  17222827 taaatctataggacatacacgaacaca 17222853  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 21596096 - 21595970
Alignment:
Q  118 caatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatcgtttctttcgaatatcggtttccagtttccaatcaacaacggg 217  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21596096 caatacagttaccacaaaaaatacaaattctgaaatcaatactgtaatttagcaatcgtttctttcgaatatcagtttccagtttccaatcaacaacggg 21595997  T
Q  218 taaatctataggacatacacgaacaca 244  Q
    ||||||||||| |||||||||||||||    
T  21595996 taaatctatagaacatacacgaacaca 21595970  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 315 - 443
Target Start/End: Complemental strand, 40196095 - 40195966
Alignment:
Q  315 ccaacaactggtatcagagtcatggttaaggctcggtatgg-agcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgag 413  Q
    |||||||||||||||||||   |||||| |||| |||  || |||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||    
T  40196095 ccaacaactggtatcagagctctggtta-ggcttggtggggtagcgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacacttgag 40195997  T
Q  414 gggaagattgtt-ggatttcaagtgtgagtg 443  Q
    ||| |||||||| |||  |||||||||||||    
T  40195996 ggggagattgttgggaaatcaagtgtgagtg 40195966  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 43481587 - 43481687
Alignment:
Q  16 ttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttagg 115  Q
    ||||||||||||||  ||  || |||||| | ||||||| ||| |||||||||||||||| |||||| |||||||||||||||||| ||||| |||||||    
T  43481587 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttggatatataagagaggggacccatatacctgatgcattaagattttagg 43481686  T
Q  116 t 116  Q
    |    
T  43481687 t 43481687  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 23162077 - 23162170
Alignment:
Q  322 ctggtatcagagtcatggttaaggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgagggg 416  Q
    ||||||| |||| | |||||| ||||||||  |||||||||| |  || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  23162077 ctggtattagagccctggtta-ggctcggttgggagcgggagcgagattctagtgtggatcaggctagtaatgtgggtgactcacacttgagggg 23162170  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 355 - 443
Target Start/End: Complemental strand, 54017783 - 54017694
Alignment:
Q  355 gagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggat-ttcaagtgtgagtg 443  Q
    ||||||||| || | ||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||| |  |||||||||||||    
T  54017783 gagcgggagcgggaccctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtg 54017694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 16143361 - 16143450
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||| ||||| || || |||||||||||||  ||||| |||| ||||| |||||||||||||| |||||||||||  |||||||||||||    
T  16143361 ggagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggagattgttggaaatcaagtgtgagtg 16143450  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 43978733 - 43978638
Alignment:
Q  17 tcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||||  ||  ||||||||| | ||||||| ||| |||  ||||||||||| |||||||||| |||||||||  ||||||||||||||    
T  43978733 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagaggagactcatatacctattgccttaaggtttt 43978638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 17732169 - 17732050
Alignment:
Q  323 tggtatcagagtcatggttaaggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagatt 422  Q
    ||||||||||| | |||||| ||||| ||  |||||||||| || |||||||| |||||||||||||| |||| | ||| ||||||||||| || || ||    
T  17732169 tggtatcagagccgtggtta-ggctcagtggggagcgggagcgggatcctagt-tggatcaggctagtgatgtggatgattcacacttgagtgggaggtt 17732072  T
Q  423 gttggat-ttcaagtgtgagtg 443  Q
    |||||||  |||||||||||||    
T  17732071 gttggataatcaagtgtgagtg 17732050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 19033400 - 19033281
Alignment:
Q  323 tggtatcagagtcatggttaaggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagatt 422  Q
    ||||||||||| | |||||| ||||| ||  |||||||||| || |||||||| |||||||||||||| |||| | ||| ||||||||||| || || ||    
T  19033400 tggtatcagagccgtggtta-ggctcagtggggagcgggagcgggatcctagt-tggatcaggctagtgatgtggatgattcacacttgagtgggaggtt 19033303  T
Q  423 gttggat-ttcaagtgtgagtg 443  Q
    |||||||  |||||||||||||    
T  19033302 gttggataatcaagtgtgagtg 19033281  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 40195956 - 40195883
Alignment:
Q  39 cacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||| | ||||||| ||| ||| |||||||||||| |||||||||||||||||| ||||||||  |||||||    
T  40195956 cacatcgactaggaatggaggaaacgttggatatataagagaggagacccatatacatgatgcctagaggtttt 40195883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 53595999 - 53596060
Alignment:
Q  56 gagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggta 117  Q
    |||||||||||||||||||| ||||||||||||||| ||| | | |||||||||||| ||||    
T  53595999 gagaaaatgttggatatataagagaggagacccataaacccgttaccttaaggttttgggta 53596060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 53596314 - 53596375
Alignment:
Q  56 gagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggta 117  Q
    |||||||||||||||||||| ||||||||||||||| ||| | | |||||||||||| ||||    
T  53596314 gagaaaatgttggatatataagagaggagacccataaacccgttaccttaaggttttgggta 53596375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 43978796 - 43978737
Alignment:
Q  368 atcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttgga 428  Q
    ||||||||||||||||  ||||| |||| ||||| |||||||||||||| |||||||||||    
T  43978796 atcctagtgtggatcaaactagtgatgt-ggtgattcacacttgagggggagattgttgga 43978737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 40196221 - 40196174
Alignment:
Q  65 ttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||| || |||||| ||||||||||||||| |||||||||||||    
T  40196221 ttggatatgtaagagaggggacccatatacctgacgccttaaggtttt 40196174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 16869735 - 16869689
Alignment:
Q  368 atcctagtgtggatcaggctagtaatgttggtgactcacacttgagg 414  Q
    |||||||||||||||| |||||| |||| ||||| ||||||||||||    
T  16869735 atcctagtgtggatcatgctagtgatgtgggtgattcacacttgagg 16869689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 23162371 - 23162309
Alignment:
Q  271 cttgatgtttagtccactgccgctcctagagctttccagactcgccaacaactggtatcagag 333  Q
    ||||| |||||||||| |||||||||  |||||  || ||||| |||||||||||||||||||    
T  23162371 cttgacgtttagtccattgccgctcccggagctccccggactccccaacaactggtatcagag 23162309  T

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Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 43834418 - 43834507
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||  ||||||||||||||||| | |||||||||| |||||||||||||||    
T  43834418 ggagcggaagtgggatcctagtgtggatcaggctagtgatgtgagtgactcacacttgaggtggagattgttgggtttcaagtgtgagtg 43834507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 31973570 - 31973481
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||| ||||| || ||||||||||||||||| ||||| ||||  |||| |||||||||||||| |||||||||||  |||||||||||||    
T  31973570 ggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagattgttggaaatcaagtgtgagtg 31973481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 6182403 - 6182467
Alignment:
Q  48 taggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    ||||||| |||||||||||||||||||| ||||| ||| | ||||||||||||||||||| ||||    
T  6182403 taggaatggagaaaatgttggatatatatgagagaagatctatatacctgatgccttaagatttt 6182467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 12466302 - 12466383
Alignment:
Q  36 tcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggta 117  Q
    ||||||||||| ||| ||| ||||||| ||||||||||||||||||  | || |||||| | ||||||||||||||| ||||    
T  12466302 tcccacatcaactagaaatggagaaaacgttggatatatacgagagtgggcctatatacttaatgccttaaggtttttggta 12466383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 4392302 - 4392255
Alignment:
Q  65 ttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagatttt 4392255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 43834487 - 43834590
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaagg 108  Q
    ||||| |||||||||||||||  || ||| ||||||   || |||| ||  |||||||| ||||||| |||||| ||||||||||||| ||| |||||||    
T  43834487 gttgggtttcaagtgtgagtgattatatctcacatcggctaagaatggatgaaatgttgaatatataagagaggggacccatatacctaatgtcttaagg 43834586  T
Q  109 tttt 112  Q
    ||||    
T  43834587 tttt 43834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 11199965 - 11200018
Alignment:
Q  59 aaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    ||||||||||||||||| |||||| ||| ||||| ||| |||||||||||||||    
T  11199965 aaaatgttggatatataagagaggtgactcatatgcctaatgccttaaggtttt 11200018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 26231792 - 26231718
Alignment:
Q  36 tcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    ||||||||| ||||||||||||| |||||||  ||||||| |||||| ||||||||||||   | ||||||||||||    
T  26231792 tcccacatcgattaggaattgaggaaatgtt--atatataagagaggggacccatataccaattaccttaaggtttt 26231718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 31973390 - 31973338
Alignment:
Q  244 agtgtgatgtctctctcttaacggattcttgatgtttagtccactgccgctcc 296  Q
    |||||||||||||||||||| |||||||| || |||||| ||||||| |||||    
T  31973390 agtgtgatgtctctctcttagcggattctagacgtttagcccactgctgctcc 31973338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 15327856 - 15327951
Alignment:
Q  17 tcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||||  ||  || |||||| | ||||||| ||| ||| ||| |||||||| |||||| |||||||||||||| || ||| |||||||    
T  15327856 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagaggggacccatatacctgttgtcttgaggtttt 15327951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 4392181 - 4392097
Alignment:
Q  310 actcgccaacaactggtatcagagtcatggttaaggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgt 395  Q
    |||| |||||||||| | |||||| |  ||||| ||||||||  ||||| ||||| | ||||||||||||||||||||||| ||||    
T  4392181 actccccaacaactgatgtcagagcccgggtta-ggctcggtggggagcaggagttggatcctagtgtggatcaggctagtgatgt 4392097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 2954674 - 2954571
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaagg 108  Q
    ||||| |||||||||||||||  ||  ||||||||  | ||||||| |||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  2954674 gttgggtttcaagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaagacccatatgcctgatgccttaagg 2954575  T
Q  109 tttt 112  Q
    ||||    
T  2954574 tttt 2954571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 2954446 - 2954371
Alignment:
Q  368 atcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||||| |||||||||  |||||||||||||||    
T  2954446 atcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagattgttgagtttcaagtgtgagtg 2954371  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 5981600 - 5981505
Alignment:
Q  17 tcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||||  ||  ||||||||| | ||||||| ||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  5981600 tcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagaggggacccatgtacctgatgccttaaggtttt 5981505  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 343 - 443
Target Start/End: Complemental strand, 5981689 - 5981588
Alignment:
Q  343 aggctcggtatggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattg-ttggatttcaagtgtgag 441  Q
    |||||||||  |||| ||||| || ||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| |||||  |||||||||||    
T  5981689 aggctcggtggggagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagattgtttggaaatcaagtgtgag 5981590  T
Q  442 tg 443  Q
    ||    
T  5981589 tg 5981588  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 2954385 - 2954307
Alignment:
Q  15 tttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatata 93  Q
    |||||||||||||||  ||  ||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||    
T  2954385 tttcaagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagaggagacccatata 2954307  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 35705219 - 35705162
Alignment:
Q  117 acaatacagttaccacaaaaaatacagattccgaaatcaatactgtaatttagcaatc 174  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  35705219 acaatacaattaccacaaaaaatacagattctgaaatcaatattgtaatttagcaatc 35705162  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 5981872 - 5981797
Alignment:
Q  36 tcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    ||||||||||||||||||| ||| ||| |||||||||||| |||||| |||||||| |||   ||||||||||||||    
T  5981872 tcccacatcaattaggaatggaggaaacgttggatatataagagaggggacccataaacc-attgccttaaggtttt 5981797  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 5072979 - 5073077
Alignment:
Q  15 tttcaagtgtgagtggctaaatcccacatcaattaggaat-tgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||||| | |||||| ||||||  ||| ||||  |  ||||||||||||||||| |||||| | | ||||||| | |||||||||||||||    
T  5072979 tttcaagtgtgagtagttaaatctcacatcggttatgaatgggtaaaaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggtttt 5073077  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 14028325 - 14028414
Alignment:
Q  17 tcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaa 106  Q
    |||||||||||||  ||  ||| ||||| | ||||||| ||| |||  ||||||||||| ||||| |||| ||||||| |||||||||||    
T  14028325 tcaagtgtgagtgattatgtcctacatcgactaggaatagaggaaacattggatatataagagagcagactcatatacttgatgccttaa 14028414  T

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Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 19548136 - 19548239
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaagg 108  Q
    ||||| ||||||| |||||||| ||  ||||||||| | ||| ||| ||| |||||||||||||||| ||||||||||||||||| || ||| |||||||    
T  19548136 gttgggtttcaagcgtgagtggttatgtcccacatcgactagaaatagaggaaatgttggatatataagagaggagacccatatatctaatgtcttaagg 19548235  T
Q  109 tttt 112  Q
    ||||    
T  19548236 tttt 19548239  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 44981991 - 44981908
Alignment:
Q  361 gagtggaatcctagtgtggatca-ggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||| | |||| |||| ||||||||||||||    
T  44981991 gagtgggatcctagtgtggatcaaggctagtgatgtgggtgactcacacttgagggggaaattgctggaattcaagtgtgagtg 44981908  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 40053375 - 40053437
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgagggg 416  Q
    ||||||| ||||| |||||||  |||||||||||||| |||| ||||||||||||||||||||    
T  40053375 ggagcggaagtgggatcctagcctggatcaggctagtgatgtgggtgactcacacttgagggg 40053437  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 11727881 - 11727813
Alignment:
Q  354 ggagcgggagtggaatcctagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagatt 422  Q
    ||||| ||||||| ||||||||||||||||| ||||| |||| ||||||||||||| ||| || |||||    
T  11727881 ggagcaggagtgggatcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagatt 11727813  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 40053201 - 40053261
Alignment:
Q  56 gagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggttttaggt 116  Q
    ||||||||||| ||| |||| |||||| ||||||||||| ||||| |||||||||||||||    
T  40053201 gagaaaatgttagatttataagagaggggacccatatacatgatgtcttaaggttttaggt 40053261  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 372 - 443
Target Start/End: Original strand, 19548086 - 19548156
Alignment:
Q  372 tagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgttggatttcaagtgtgagtg 443  Q
    |||| |||||||||||||| |||| |||||||||||||||||| |  ||||||||| ||||||| |||||||    
T  19548086 tagtttggatcaggctagtgatgtgggtgactcacacttgaggag-ggattgttgggtttcaagcgtgagtg 19548156  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 401 - 440
Target Start/End: Complemental strand, 40732651 - 40732612
Alignment:
Q  401 actcacacttgaggggaagattgttggatttcaagtgtga 440  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  40732651 actcacacttgaggggaatattgttggatttcaagtgtga 40732612  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 10066574 - 10066626
Alignment:
Q  60 aaatgttggatatatacgagaggagacccatatacctgatgccttaaggtttt 112  Q
    |||||||||||||||| || |||||| |||||||||| |||||||||| ||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagatttt 10066626  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 33562751 - 33562703
Alignment:
Q  401 actcacacttgaggggaagattgttggatttcaagtgtgagtgtttaag 449  Q
    |||||||||| |||| ||| ||||||||||||||||||||||| |||||    
T  33562751 actcacacttcagggaaaggttgttggatttcaagtgtgagtggttaag 33562703  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 35027895 - 35027985
Alignment:
Q  9 gttggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgat 99  Q
    ||||||||| |||||| ||||  ||  | ||||||| |||| ||||  || |||||||||||||||| ||||||||||  |||||||||||    
T  35027895 gttggattttaagtgttagtgattatgttccacatcgattaagaataaaggaaatgttggatatataagagaggagacttatatacctgat 35027985  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 34217532 - 34217632
Alignment:
Q  11 tggatttcaagtgtgagtggctaaatcccacatcaattaggaattgagaaaatgttggatatatacgagaggagacccatatacctgatgccttaaggtt 110  Q
    |||| ||||||||||||||| ||| |||||||||   ||||||| ||| ||||| |||||||||| || ||| |||  |||||||| |  ||||||||||    
T  34217532 tggaattcaagtgtgagtggttaa-tcccacatcggctaggaatggaggaaatggtggatatataagataggtgacttatatacctaactccttaaggtt 34217630  T
Q  111 tt 112  Q
    ||    
T  34217631 tt 34217632  T

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Target: scaffold0548 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 4286 - 4234
Alignment:
Q  372 tagtgtggatcaggctagtaatgttggtgactcacacttgaggggaagattgt 424  Q
    |||||||||||| |||||| |||| | ||||||||| ||||||||||||||||    
T  4286 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgt 4234  T

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