View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_39 (Length: 408)
Name: NF8957_low_39
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 210 - 393
Target Start/End: Complemental strand, 3590265 - 3590082
Alignment:
| Q |
210 |
aaggtactcacaaccaccttagtcaaatatgaaatcctgcaaatnnnnnnntagaaaaccatgagtcaaataagttgaatctttgaaaccttaaaacagg |
309 |
Q |
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| T |
3590265 |
aaggtactcacaaccaccttagtcaaatatgaaatcctgcaaattaaaaaatagaaaaccatgagtcaaataagttgaatctttgaaaccttaaaacagg |
3590166 |
T |
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| Q |
310 |
agaattctttaataaataacacaagggaattcttgcgaaaatcgtttcatgttgataagttgttttaaattgacatgtttttat |
393 |
Q |
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| T |
3590165 |
agaattctttaataaataacacaagggaattcttgcgaaaatcgtttcatgttgataagttgttttaaattgacatgtttttat |
3590082 |
T |
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