View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_41 (Length: 401)
Name: NF8957_low_41
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 15469655 - 15469288
Alignment:
| Q |
20 |
ccaggcttccacaatattaaatgtagccgacaatatgcacaatttttaacaattatagtaaccaattttaaatttagctacatttataggatgcaattat |
119 |
Q |
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| T |
15469655 |
ccaggcttccacaattttaaatgtagccgacaatatgcacaatttttaacaattatagtaaccaattttaaatttagctacatttatagaatgcaattat |
15469556 |
T |
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| Q |
120 |
agtttcttgcagctctattcaatttttatcataaaaaaggaactctttaagtggtcactgtccttgcctnnnnnnnctgctcactgtcccagttttaaaa |
219 |
Q |
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| T |
15469555 |
agtttcttgcagctctattcaatttttatcataaaaaaggaactctttaactggtcactgtccttgcctaaaaaaactgctcactgtcccagttttaaaa |
15469456 |
T |
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| Q |
220 |
tgttgaatcaatcacaatgattgaagttagtggaattttcttaaaagaagaggaactggactattagttaaattctttggttcttgttcaaataaaaagg |
319 |
Q |
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| T |
15469455 |
tgttgaatcaatcacaatgattgaagttagtggaattttcttaaaagaagaggaactggactattagttaaattcttttgttcttgttcaaataaaaagg |
15469356 |
T |
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| Q |
320 |
ttaaattctttagatgaaattcattgtagtatttcccttctttcatctgtacaatagtagagtattat |
387 |
Q |
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| T |
15469355 |
ttaaattctttagatgaaattcattctggtatttcccttctttcatctttccaatagtagagtattat |
15469288 |
T |
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