View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_low_43 (Length: 387)
Name: NF8957_low_43
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 44452982 - 44452619
Alignment:
| Q |
13 |
aggttctgctctgtctttggcaaactgaaaatcagaaatggaagtggtgtcatcttttgttcttgttatctttagacctaattcaacctccataacaatt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44452982 |
aggtcctgctctgtctttggcaaactgaaaatcagaaatggaagtggtgtcatcttttgttcttgttatctttagacctaattcaacctccataacaatt |
44452883 |
T |
|
| Q |
113 |
gatccttaatatttcctgaaactaatgagaaagcatataaataggaaaatgtttcaaaatttcgtgtttcttttaacagacattatggtaagcatttttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44452882 |
gatccttaatatttcctgaaactaatgagaaagcatataaataggaaaatgtttcaaaatttcgtgtttcttttaacagacattatggtaagcatttttt |
44452783 |
T |
|
| Q |
213 |
ggagtacgtacgtatcctagtacagttttgtagtcctgagaacataattgtgcaagtaaagcacatattcattccttccaattgcttctttgttactaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44452782 |
ggagtacgtacgtatcctagtacagttttgtagtcctgagaacataattgtgcaagtaaagcacatattcattccttccaattgcttctatgttactaat |
44452683 |
T |
|
| Q |
313 |
ttaatactatttatattcattgtttttgaaagaatctattgtttttggacactgtcgtgtaaca |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44452682 |
ttaatactatttatattcattgtttttgaaagaatctattgtttttggacactgtcgtgtaaca |
44452619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University