View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_44 (Length: 384)
Name: NF8957_low_44
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 315
Target Start/End: Original strand, 8169775 - 8170003
Alignment:
| Q |
87 |
caaaatgacatcaacagaacaggattggtcgattggaatattttcaattgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
186 |
Q |
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| T |
8169775 |
caaaatgacatcaacagaacatgattggtcgattggaatattttcaactgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
8169874 |
T |
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| Q |
187 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcatttagaagttggatcgatgacatatctgatgggtttcagc |
286 |
Q |
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| T |
8169875 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcagttagaagttggatcggtgacatatctgatgggtttcagc |
8169974 |
T |
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| Q |
287 |
caagaagattgtagagggagaacgttttt |
315 |
Q |
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| T |
8169975 |
caagaagattgtagagggagaactttttt |
8170003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 8169658 - 8169709
Alignment:
| Q |
37 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
88 |
Q |
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| T |
8169658 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
8169709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8167896 - 8167941
Alignment:
| Q |
1 |
tacaacataagagatatttgttattatattttaatggtaaaactta |
46 |
Q |
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| T |
8167896 |
tacaacataagagatatttgttattatattttaatggtaaaactta |
8167941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 8172461 - 8172491
Alignment:
| Q |
313 |
tttatattcccgtcaatatttctatgtacaa |
343 |
Q |
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| T |
8172461 |
tttatattcccgtcaatatttctatgtacaa |
8172491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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