View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_46 (Length: 383)
Name: NF8957_low_46
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 50552671 - 50552297
Alignment:
| Q |
1 |
cggaccattgatgctggttctaaggttttctctcaatagttttgaagaatagtgaataatttaccccaacatgatgtggcatcaatgaaaattattcact |
100 |
Q |
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| T |
50552671 |
cggaccattgatgctggttctaaggttttctctcaatagttttgaacaatagtgaataatttaccccaacatgatgtggcatcaatgaaaattattcact |
50552572 |
T |
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| Q |
101 |
tgtactctactatctatgtcaaacttataaagtatttgacaaaattttatatataccttttgttattttgaaatttaacccctctctccctcctctctaa |
200 |
Q |
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| T |
50552571 |
tgtagtctactatctatgtcaaacttataaagtatttgacaaaattttacatataccttttgttattttgaaatttaacccctctctccctactctctaa |
50552472 |
T |
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| Q |
201 |
caattgtcatattataagtaaaatatgttagccaataaattatatctcgtggataatttttattggtctcacatcatgtgggtaaattatacacaattat |
300 |
Q |
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| T |
50552471 |
caattgtcatattataagtaaaatatgttagccaataaatcatctctcgtggataatttttattggtctcacatcatgtgggtaaattatacacaattct |
50552372 |
T |
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| Q |
301 |
tcaaatgtaacttaggttgataatgttgtaagttctaaaacttatataaattgattgattggtatctctgcttct |
375 |
Q |
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| T |
50552371 |
ttaaatgtaacttaggttgataatgttctaagttctaaaactaatataaattgattgattggtatctcttcttct |
50552297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 35644104 - 35644142
Alignment:
| Q |
88 |
aaaattattcacttgtactctactatctatgtcaaactt |
126 |
Q |
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|||||||||||| ||||||| |||||||||||||||||| |
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| T |
35644104 |
aaaattattcacatgtactccactatctatgtcaaactt |
35644142 |
T |
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