View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_low_49 (Length: 372)
Name: NF8957_low_49
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 41659637 - 41659904
Alignment:
| Q |
1 |
tcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtctttcaagtttctatggtcattcgaacacatcccag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
41659637 |
tcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtcttccaagtttctatggtcatttgaacacaacccag |
41659736 |
T |
|
| Q |
101 |
gttcgattttgggtttatgttccatgagaagccttaaagatgcaaactttaggggaaatggggtttaacagaaaatgggtttcacgaaaagttggtgggt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41659737 |
gttcgattttgggtttatgttacatgagaagccttaaagatgcaaactttaggggaaatggggtttaacagaaaatgggtttcacgaaaagttggtgggt |
41659836 |
T |
|
| Q |
201 |
tttgatgaaaatggtgggtacgaaagaatatgaggaaggaaaggagacagaaacataatcatgaaaat |
268 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41659837 |
tttgatgaaaatggtgggtatgaaagaatatgaggaaggaaaggagacagaaacaaaatcatgaaaat |
41659904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 41687666 - 41687576
Alignment:
| Q |
35 |
acaccgaaacaagttcctgaatgctcatgtctttcaagtttctatggtcattcgaacacatcccaggttcgattttgggtttatgttccat |
125 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||| ||| |||||||||||| |||||| || ||||||||| ||||||||| ||| ||||| |
|
|
| T |
41687666 |
acacagaaaccagttcatgaatgctcatgtcttccaaatttctatggtcactcgaactcaacccaggttcagttttgggttgatgctccat |
41687576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 41659948 - 41659984
Alignment:
| Q |
321 |
accactgtcaacgtatagaaacagagggaagagtaaa |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41659948 |
accactgtcaacgtatagaaacagagggaagagtaaa |
41659984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 41709012 - 41709093
Alignment:
| Q |
3 |
atcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtctttcaagtttctatggtca |
84 |
Q |
| |
|
|||||||||||||||| |||| | ||| ||| ||||| | || |||||||||||| ||||| ||| |||||| |||||||| |
|
|
| T |
41709012 |
atcaaactgttctgtcagaaatgttgttcgcaacaccaacaccagttcctgaatgttcatgccttccaagttcatatggtca |
41709093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University