View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_5 (Length: 959)
Name: NF8957_low_5
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 51 - 715
Target Start/End: Complemental strand, 42144075 - 42143408
Alignment:
| Q |
51 |
aatttttagtatttcaaaattacagctatataagatatccttttaacttggttttcctttcgggtgtgaaatcaataacttagactgagcatagtgaagg |
150 |
Q |
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| T |
42144075 |
aatttttagtatttcaaaattacagctatataagatatccttttaacttggttttcctttcgggtgtgaaatcaataacttagactgagcatagtgaagg |
42143976 |
T |
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| Q |
151 |
attttgtctcattcgtgaattgtttgataattgatgatactaagctcggactttgtattgctaaactttgacacaccttctgtttannnnnnnnnnnnnn |
250 |
Q |
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| T |
42143975 |
attttgtctcattcgtgaattgtttgataactgatgatactaagcttggactttgtattgctaaactttgacacaccttctgtttattttttattttttt |
42143876 |
T |
|
| Q |
251 |
ggcaaaccaatgtatcctcttgcgcaagtatgtaccttagattcttaagatatctgagatttatttaagggtttgacctcttctaaaatannnnnnnnat |
350 |
Q |
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| T |
42143875 |
ggcaaaccaatgtatcctcttgcgcaagtatgtaccttagattcttaagatatctcagatttatttaagggtttgacctcttctaaaatattttttttat |
42143776 |
T |
|
| Q |
351 |
tcacagtagtcagggtcaaacctctgaccaaataattaacgagcccgagtatctatgatctgtgctacaccttgttgttgagtggtgacccacct---gt |
447 |
Q |
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| T |
42143775 |
tcacagtagtcagggccaaacctcggaccaaatgattaacgagcccaagtatctatgatctgtgctacaccttgttgttgagtggtgacccaccttctgt |
42143676 |
T |
|
| Q |
448 |
ttttagctccaaattaatatcattgaattgttttgcttataaaataattatattatttggatcggtgattttgctcattatagttaattccattgattac |
547 |
Q |
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| T |
42143675 |
ttttagctccaaattcatatcattgaattgttttgcttataaaataattatattatttggatcggtgattttgctcattatagttaattccattgattac |
42143576 |
T |
|
| Q |
548 |
aacgttcacagggttatataaatatgaatgaatcatactaagttgaaataagaaatatgaatgaatcacaaatttagcttctaaaattataggtgtttga |
647 |
Q |
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| T |
42143575 |
aacgttcacacggttatataaatatgaatgaatcagactaagttgaaataagaaatatgaatgaatcacaaatttagcttctaaaattataggtgtttga |
42143476 |
T |
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| Q |
648 |
caatttgacatatgcatcaacaaaatttcaaaatgatttttgaaatataaaatatccgatcatgttaa |
715 |
Q |
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| T |
42143475 |
caatttgacatatgcatcaacaaaatttcaaaatgatttttgaaatataaaatatccgatcatgttaa |
42143408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 740 - 941
Target Start/End: Complemental strand, 42143410 - 42143209
Alignment:
| Q |
740 |
taaactgaatctatagaaagatataaatcatatagctagctaacatgcatgcatgcaagttgaagtaaaagtgtacaacatatgtaacagtgtctcacct |
839 |
Q |
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| T |
42143410 |
taaactgaatctatagaaagatataaatcatatagctagctaacatgcatgcatgcaagttgaagtaaaagtgtacaacatatgtaacagtgtctcacct |
42143311 |
T |
|
| Q |
840 |
tgacttcatctaactcaggtcctctaagagcagcaaagtatctaccagcaggaacacttgcattaacagaatcatcatccacaccagaagcaccattgat |
939 |
Q |
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| T |
42143310 |
tgacttcatctaactcaggtcctctaagagcagcaaagtatctaccagcaggaacacttgcattaacagaatcatcatccacaccagaagcaccattgat |
42143211 |
T |
|
| Q |
940 |
ct |
941 |
Q |
| |
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|| |
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| T |
42143210 |
ct |
42143209 |
T |
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Back To:
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