View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_51 (Length: 334)
Name: NF8957_low_51
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 2390309 - 2389993
Alignment:
| Q |
10 |
ggtgttgtgtatgatgtatgcgatagtgattcataggttatttcccaacaatattaccaattacccttaattttgtttagagaatgtaacaaatttttat |
109 |
Q |
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| T |
2390309 |
ggtgttgtgtatgatgtatgtgatagtgattcataggttatttcccaacaatattaccaattacccttaattttgtttagagaatgtaacaaatttttat |
2390210 |
T |
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| Q |
110 |
gacattttctctctctttccaattaggccgtctacactcctccaaaaccagtacgaggaggaattccaatctgttttccacaggtaatttt-------ag |
202 |
Q |
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| T |
2390209 |
gacattttctctctctttccaattaggccgtctacactcctccaaaaccagtacgaggaggaattccaatctgttttccacaggtaattttagattttag |
2390110 |
T |
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| Q |
203 |
atagcagtactatttatttaacacctgaattacacaaatctatatagatagattgatagattaaaaggttggttggtgtgatttcttagtttggaaaccg |
302 |
Q |
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| T |
2390109 |
atagcagtactatttatttaacacctgaattacacaaatctatatagatagatagatagataaaaaggttggttggtgtgattttttagtttggaaaccg |
2390010 |
T |
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| Q |
303 |
tggaacgctagagcaac |
319 |
Q |
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| T |
2390009 |
tggaacactagagcaac |
2389993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 36807781 - 36807825
Alignment:
| Q |
151 |
ccaaaaccagtacgaggaggaattccaatctgttttccacaggta |
195 |
Q |
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| T |
36807781 |
ccaaaagcaatacgaggaggaattccaatatgttttccacaggta |
36807825 |
T |
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