View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8957_low_58 (Length: 310)

Name: NF8957_low_58
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8957_low_58
NF8957_low_58
[»] chr1 (7 HSPs)
chr1 (18-293)||(37880488-37880763)
chr1 (73-152)||(37866637-37866716)
chr1 (170-290)||(37866771-37866891)
chr1 (152-260)||(37909997-37910110)
chr1 (17-152)||(37909827-37909961)
chr1 (215-293)||(37917179-37917256)
chr1 (18-56)||(37916969-37917007)
[»] scaffold0187 (8 HSPs)
scaffold0187 (215-293)||(7726-7804)
scaffold0187 (215-293)||(18054-18132)
scaffold0187 (152-260)||(28967-29080)
scaffold0187 (17-152)||(29116-29250)
scaffold0187 (21-151)||(7887-8016)
scaffold0187 (21-151)||(18215-18344)
scaffold0187 (152-200)||(7800-7848)
scaffold0187 (152-200)||(18128-18176)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 37880488 - 37880763
Alignment:
Q  18 atcttcacttacctttgggacatttggtatattccattaaattgcaaaaaagaggctgaactgcaggcagtcaatgttgaagaataaataaatctatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37880488 atcttcacttacctttgggacatttggtatattccattaaattgcaaaaaagaggctgaactgcaggcagtcaatgttgaagaataaataaatctatttg 37880587  T
Q  118 gctgaatgttacagaatcagcttgcaaacaaatagtaaaggaaagtgagaagtggtctttgattcaagaatcagtggcagtaatggctcataagagtagt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37880588 gctgaatgttacagaatcagcttgtaaacaaatagtaaaggaaagtgagaagtggtctttgattcaagaatcagtggcagtaatggctcataagaatagt 37880687  T
Q  218 aaaaagtaagcaacagtgttataatcttgactcaatcaaatataaaatactttgtcactatgaagaagataagcac 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37880688 aaaaagtaagcaacagtgttataatcttgactcaatcaaatataaaatactttgtcactatgaagaagataagcac 37880763  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 37866637 - 37866716
Alignment:
Q  73 ctgaactgcaggcagtcaatgttgaagaataaataaatctatttggctgaatgttacagaatcagcttgcaaacaaatag 152  Q
    ||||| ||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||    
T  37866637 ctgaattgctggcagtcaatggtgaagaataaataaatcaatttggttgaatgttacagaatctgcttgccaacaaatag 37866716  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 37866771 - 37866891
Alignment:
Q  170 tggtctttgattcaagaatcagtggcagtaatggctcataagagtagtaaaaagtaagcaacagtgttataatcttgactca-atcaaatataaaatact 268  Q
    |||| |||||||||||||||||||| ||||||||||||||   |||||||||||||||||| ||| |  ||||||||| ||| || ||||||| |||| |    
T  37866771 tggtttttgattcaagaatcagtggaagtaatggctcatatctgtagtaaaaagtaagcaatagtttcgtaatcttga-tcatattaaatatataatatt 37866869  T
Q  269 ttgtcactatgaagaagataag 290  Q
    ||| |||||||||| |||||||    
T  37866870 ttggcactatgaagcagataag 37866891  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 37909997 - 37910110
Alignment:
Q  152 gtaaaggaaagtgagaagtggtctttgattcaagaatcagtggcagtaatgg-----ctcataagagtagtaaaaagtaagcaacagtgttataatcttg 246  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| |||| |     |||||||| |||||||||||| ||||||||| | |||||||||    
T  37909997 gtaaaggaaaatgagaaatggtctttgattcaagaatcagtggcattaattgttcatctcataagtgtagtaaaaagtgagcaacagtttcataatcttg 37910096  T
Q  247 actcaatcaaatat 260  Q
    | || || ||||||    
T  37910097 attccattaaatat 37910110  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 37909827 - 37909961
Alignment:
Q  17 aatcttcacttacctttgggacatttggtatattccattaaattgcaaaaaagaggct-gaactgcaggcagtcaatgttgaagaataaataaatctatt 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||  | | |||   | ||| ||||||| ||||||||||| ||||||||||| || || |||    
T  37909827 aatcttcacttaccttttggacatttggtatattctattaatgttccaaagtaaagctagaactgctggcagtcaatgctgaagaataaacaa-tcaatt 37909925  T
Q  116 tggctgaatgttacagaatcagcttgcaaacaaatag 152  Q
     || ||||||||||||||||||||| |||||||||||    
T  37909926 -ggttgaatgttacagaatcagcttccaaacaaatag 37909961  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 37917179 - 37917256
Alignment:
Q  215 agtaaaaagtaagcaacagtgttataatcttgactcaatcaaatataaaatactttgtcactatgaagaagataagcac 293  Q
    |||||||||| ||||||||| | |||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||    
T  37917179 agtaaaaagtgagcaacagtttcataatcttgattgaatcaaatataaaatactttgccact-tgaagaagataagcac 37917256  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 37916969 - 37917007
Alignment:
Q  18 atcttcacttacctttgggacatttggtatattccatta 56  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  37916969 atcttcacttaccttatggacatttggtatattccatta 37917007  T

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Target: scaffold0187 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 7804 - 7726
Alignment:
Q  215 agtaaaaagtaagcaacagtgttataatcttgactcaatcaaatataaaatactttgtcactatgaagaagataagcac 293  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||    
T  7804 agtaaaaagtgagcaacagtgtcataatcttgactcaatcaaatataaaatattttgccactgtgaagtagataagcac 7726  T

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Target: scaffold0187; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 18132 - 18054
Alignment:
Q  215 agtaaaaagtaagcaacagtgttataatcttgactcaatcaaatataaaatactttgtcactatgaagaagataagcac 293  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||    
T  18132 agtaaaaagtgagcaacagtgtcataatcttgactcaatcaaatataaaatattttgccactgtgaagtagataagcac 18054  T

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Target: scaffold0187; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 29080 - 28967
Alignment:
Q  152 gtaaaggaaagtgagaagtggtctttgattcaagaatcagtggcagtaatgg-----ctcataagagtagtaaaaagtaagcaacagtgttataatcttg 246  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| |||| |     |||||||| |||||||||||| ||||||||| | |||||||||    
T  29080 gtaaaggaaaatgagaaatggtctttgattcaagaatcagtggcattaattgttcatctcataagtgtagtaaaaagtgagcaacagtttcataatcttg 28981  T
Q  247 actcaatcaaatat 260  Q
    | || || ||||||    
T  28980 attccattaaatat 28967  T

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Target: scaffold0187; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 29250 - 29116
Alignment:
Q  17 aatcttcacttacctttgggacatttggtatattccattaaattgcaaaaaagaggct-gaactgcaggcagtcaatgttgaagaataaataaatctatt 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||  | | |||   | ||| ||||||| ||||||||||| ||||||||||| || || |||    
T  29250 aatcttcacttaccttttggacatttggtatattctattaatgttccaaagtaaagctagaactgctggcagtcaatgctgaagaataaacaa-tcaatt 29152  T
Q  116 tggctgaatgttacagaatcagcttgcaaacaaatag 152  Q
     || ||||||||||||||||||||| |||||||||||    
T  29151 -ggttgaatgttacagaatcagcttccaaacaaatag 29116  T

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Target: scaffold0187; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 8016 - 7887
Alignment:
Q  21 ttcacttacctttgggacatttggtatattccattaaattg-caaaaaagaggctgaactgcaggcagtcaatgttgaagaataaataaatctatttggc 119  Q
    |||||||| |||| || ||||||||||||||  ||||| || ||||  | || | ||||||| ||||||||||| |||||||||||||| || ||| |||    
T  8016 ttcacttatcttttggccatttggtatattcttttaaagtgtcaaagtaaagccagaactgctggcagtcaatgctgaagaataaataa-tccatt-ggc 7919  T
Q  120 tgaatgttacagaatcagcttgcaaacaaata 151  Q
    |||||||||||||||| |||||||||||||||    
T  7918 tgaatgttacagaatctgcttgcaaacaaata 7887  T

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Target: scaffold0187; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 18344 - 18215
Alignment:
Q  21 ttcacttacctttgggacatttggtatattccattaaattg-caaaaaagaggctgaactgcaggcagtcaatgttgaagaataaataaatctatttggc 119  Q
    |||||||| |||| || ||||||||||||||  ||||| || ||||  | || | ||||||| ||||||||||| |||||||||||||| || ||| |||    
T  18344 ttcacttatcttttggccatttggtatattcttttaaagtgtcaaagtaaagccagaactgctggcagtcaatgctgaagaataaataa-tccatt-ggc 18247  T
Q  120 tgaatgttacagaatcagcttgcaaacaaata 151  Q
    |||||||||||||||| |||||||||||||||    
T  18246 tgaatgttacagaatctgcttgcaaacaaata 18215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 7848 - 7800
Alignment:
Q  152 gtaaaggaaagtgagaagtggtctttgattcaagaatcagtggcagtaa 200  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  7848 gtaaaggaaaatgagaaatggtctttgattcaagaatcagtggcagtaa 7800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 18176 - 18128
Alignment:
Q  152 gtaaaggaaagtgagaagtggtctttgattcaagaatcagtggcagtaa 200  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  18176 gtaaaggaaaatgagaaatggtctttgattcaagaatcagtggcagtaa 18128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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