View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_63 (Length: 284)
Name: NF8957_low_63
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_63 |
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| [»] scaffold1004 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 7428340 - 7428600
Alignment:
| Q |
1 |
aattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
100 |
Q |
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| T |
7428340 |
aattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
7428439 |
T |
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| Q |
101 |
tgccgcttgtagtgaaagcaatgttagggtttccgtcaacgtaaccgtttctgtcttcgttgttgaatttggtttatggtttgtctgtttacaattagag |
200 |
Q |
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| T |
7428440 |
tgccgcttgtagtgaaagcaatgttagggtttccgtcaacgtaactgtttctgtcttcgttgttgaatttggtttacggtttgtctgtttacaattagag |
7428539 |
T |
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| Q |
201 |
ccgctaacaaccctggttgaagaaaaacataaacccatgatgatgttatgttgaagatgga |
261 |
Q |
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| T |
7428540 |
ccgctaacaaccctggtcgaagaaaaacataaacccatgatgatgttatgttgaagatgga |
7428600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 12217340 - 12217094
Alignment:
| Q |
1 |
aattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
100 |
Q |
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| T |
12217340 |
aattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
12217241 |
T |
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| Q |
101 |
tgccgcttgtagtgaaagcaatgttagggtttccgtcaacgtaaccgtttctgtcttcgttgttgaatttggtttatggtttgtctgtttacaattagag |
200 |
Q |
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| T |
12217240 |
tgccgcctgaagtgaaagcaatgttagggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgtttacaattagag |
12217141 |
T |
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| Q |
201 |
ccgctaacaaccctggttgaagaaaaacataaacccatgatgatgtt |
247 |
Q |
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| T |
12217140 |
ccactaacaacgttgttcgaagaaaaacataaacccatgatgatgtt |
12217094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 33037455 - 33037365
Alignment:
| Q |
10 |
acttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
100 |
Q |
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| T |
33037455 |
acttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacgagatcaaacggaagagtgggtagtgg |
33037365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 1454 - 1364
Alignment:
| Q |
10 |
acttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg |
100 |
Q |
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|||| |||| |||||||| |||| |||||| || || |||| |||||||| ||||| ||||||||||| |||||||| |||||||||| |
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| T |
1454 |
acttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttcggcaacaagatctaacggaagactgggtagtgg |
1364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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