View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_64 (Length: 283)
Name: NF8957_low_64
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 36675075 - 36675215
Alignment:
| Q |
126 |
cattaaaccatgacagccaaataaaagaaaacaaaaaggactattattatatctatgcaacaaaacaacagcctaaactcttcagctctcattttcattc |
225 |
Q |
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| T |
36675075 |
cattaaaccatgacagccaaataaaagaaaacaaaaaggactattattatatctatgcaacaaaacaacagcctaaacacttcagctctcattttcattc |
36675174 |
T |
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| Q |
226 |
aatgttgttttgagaaattgtcaatttctatcatgacaatt |
266 |
Q |
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| T |
36675175 |
aatgttgttttgagaaattgtcaatttctattatgacaatt |
36675215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 36674963 - 36675043
Alignment:
| Q |
14 |
attctaccaaactaaccacttgtgtttcaaatgttaccaagacatatatgtatcaagagtcaagaccaatctaagtgagaa |
94 |
Q |
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| T |
36674963 |
attctaccaaactaaccacttgtgtttcagatgttaccaagacatatatgtatcaagagtcaagaccaatctaagtgagaa |
36675043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 36669442 - 36669539
Alignment:
| Q |
169 |
ttattatatctatgcaacaaaacaacagcctaaactcttcagctctcattttcattcaatgttgttttgagaaattgtcaatttctatcatgacaatt |
266 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||| |
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| T |
36669442 |
ttattatatctatgcaacaaaacaacagccaaaaatcttcagctctcgttttcattcaatgttcttttgaggaattgtcaatttctattatgacaatt |
36669539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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