View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8957_low_69 (Length: 281)

Name: NF8957_low_69
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8957_low_69
NF8957_low_69
[»] chr3 (1 HSPs)
chr3 (1-281)||(49064149-49064428)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 49064428 - 49064149
Alignment:
Q  1 tcaaatgaattctccctctgtgttaccgaaatcccgcatttacgcaatcatcacattgataatcattagatcaccattggatgatggtgatatcaaatat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49064428 tcaaatgaattctccctc-gtgttaccgaaatcccgcatttacgcaatcatcacattgataatcattagatcaccattggatgatggtgatttcaaatat 49064330  T
Q  101 attttagattattttaaaaaccaaaatcccggccttaaaatttacaccatttgaatcttgatcttattgtcactaaaatggtgaccgcctgaacgtgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49064329 attttagattattttaaaaaccaaaatcccggccttaaaatttacaccatttgaatcttgatcttattgtcactaaaatggtgaccgcctgaacgtgata 49064230  T
Q  201 aagaatcaaaattccaacatccaacacagcttaagcatgatagctcaattgattaatcttccacaatcacaaggcacttta 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49064229 aagaatcaaaattccaacatccaacacagcttaagcatgatagctcaattgattaatcttccacaatcacaaggcagttta 49064149  T

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