View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_76 (Length: 267)
Name: NF8957_low_76
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_76 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 32888516 - 32888765
Alignment:
| Q |
17 |
tcaagatatgagtttcggtcaacagttcctagttctaaaacatgaattttcaatttctaatctttctattaatcttttaaatttcctaacgggttaactc |
116 |
Q |
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||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32888516 |
tcaagatatgagttttggtcaaaagttc-tagttctaaaacatgaattttcaatttctaatctttctattaatcttttaaatttcctaacgggttaactc |
32888614 |
T |
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| Q |
117 |
aggccattgttagaaaataatagggatcaggtggaattcaaagttttcgtagtacataaacattgcaaattttgaatagtgttagtggtacactttccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32888615 |
aggccattgttagaaaataatagggatcaggtggaactcaaagttttcgtagtacataaacattgcaaattttgaatagtgttagtggtacactttccaa |
32888714 |
T |
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| Q |
217 |
ctcacttttgtcaacatactactttctgttagaaatttaaatttgtctcac |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32888715 |
ctcacttttgtcaacatactactttctgttagaaatttaaatttgtctcac |
32888765 |
T |
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