View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_82 (Length: 241)
Name: NF8957_low_82
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_82 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 7310255 - 7310021
Alignment:
| Q |
7 |
gatggacatcaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagag |
106 |
Q |
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| T |
7310255 |
gatgcacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaa |
7310156 |
T |
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| Q |
107 |
tttcggaaacttgagaatgggggaaactctattatcaaattccatctttcccaagttaattacctcctttgtatagatctgattgttctaagtactacat |
206 |
Q |
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| T |
7310155 |
cttcggaaacttgagaaaggggaaaactttattatcaaattccatctttcccaagttaattacttcctttgttcagatctgattgttccaagcactacat |
7310056 |
T |
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| Q |
207 |
tttgtaacttgtgggcaggctataatcttgagaat |
241 |
Q |
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| T |
7310055 |
tttgtaacttgttggcaggctataatcttgagaat |
7310021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 7329734 - 7329857
Alignment:
| Q |
16 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaa |
115 |
Q |
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| T |
7329734 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgaactttggaaa |
7329832 |
T |
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| Q |
116 |
cttgagaatgggggaaactctatta |
140 |
Q |
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| T |
7329833 |
cttgagaatgaggaaaactctatta |
7329857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 7300897 - 7300843
Alignment:
| Q |
41 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatg |
95 |
Q |
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| T |
7300897 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaaatg |
7300843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 13898963 - 13899003
Alignment:
| Q |
55 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
95 |
Q |
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| T |
13898963 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
13899003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 13569143 - 13569182
Alignment:
| Q |
55 |
agttctgatttagggtcatgttactaatgcatctgaaaat |
94 |
Q |
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| T |
13569143 |
agttctgatttagggtcaagttactaatgcatatgaaaat |
13569182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 24552799 - 24552759
Alignment:
| Q |
55 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
95 |
Q |
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| T |
24552799 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
24552759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 23964003 - 23964039
Alignment:
| Q |
55 |
agttctgatttagggtcatgttactaatgcatctgaa |
91 |
Q |
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| T |
23964003 |
agttctgatttaggctcaagttactaatgcatctgaa |
23964039 |
T |
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