View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_95 (Length: 212)
Name: NF8957_low_95
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_95 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 41659660 - 41659467
Alignment:
| Q |
19 |
gtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttgacttg |
118 |
Q |
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| T |
41659660 |
gtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacacacagagattctacattttcaagagaagtttgacttg |
41659561 |
T |
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| Q |
119 |
gagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaaacat |
212 |
Q |
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| T |
41659560 |
gagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagggcacagagtaattatgaaacat |
41659467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 41686585 - 41686465
Alignment:
| Q |
89 |
attctgcattttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaa |
188 |
Q |
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| T |
41686585 |
attctacatcttcaagagaagtttgaattggagagactaacgaggtttcaagctgaggaagatttgagaaaaagagaggaactttgtgaaagagggataa |
41686486 |
T |
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| Q |
189 |
gagcacagaataattatgaaa |
209 |
Q |
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| T |
41686485 |
gagcacaaaataattatgaaa |
41686465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 41709032 - 41708843
Alignment:
| Q |
20 |
tttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttgacttgg |
119 |
Q |
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| T |
41709032 |
tttctgacagaacagtttgatagaattgaagaggttttagtgagtagatataagagactagaaaatgagattatagatcttcaagagaaggttgaaatgg |
41708933 |
T |
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| Q |
120 |
agagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaaa |
209 |
Q |
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| T |
41708932 |
agaaaaaaacgaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaa |
41708843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 41718070 - 41717915
Alignment:
| Q |
54 |
ttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagattt |
153 |
Q |
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| T |
41718070 |
ttttagtgagtagatataagagactagaaaatgagattatagatcttcaagagaaggttgaaatggagaaaaaaacaaggtttcaagccgaggaagattt |
41717971 |
T |
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| Q |
154 |
gagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaaa |
209 |
Q |
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| T |
41717970 |
gagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaa |
41717915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 41687703 - 41687866
Alignment:
| Q |
45 |
ttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttgacttggagagactgatgaggtttcaagctga |
144 |
Q |
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| T |
41687703 |
ttgaagaggttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttga |
41687802 |
T |
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| Q |
145 |
agaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaa |
208 |
Q |
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| T |
41687803 |
ggaagatgtgaggaaaagagaggaactatgtgaaagagggaaaagagcacaacaaaattatgaa |
41687866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 14682416 - 14682492
Alignment:
| Q |
133 |
gtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaaa |
209 |
Q |
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| T |
14682416 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaa |
14682492 |
T |
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