View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_high_2 (Length: 623)
Name: NF8958_high_2
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5176211 - 5175891
Alignment:
| Q |
1 |
agatactatgagagactttattgaggatactacaaaaatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatgcatggcgttcacatg |
100 |
Q |
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| T |
5176211 |
agatactatgagagactttattgaggatactacaaaaatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatacatggcgttcacatg |
5176112 |
T |
|
| Q |
101 |
tgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttagaccgtga |
200 |
Q |
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| T |
5176111 |
tgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttaggccgtga |
5176012 |
T |
|
| Q |
201 |
gatagtcgttatttgtcaataaatgatcaaatattggagtcttcatttgcatcaaatgtagcatgaagggaacacgtgccatgattatcttgtcaagatt |
300 |
Q |
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| T |
5176011 |
gatagtcgttattcgtcaataaatgatcaaatattggagtcttcaattgcatcaaatgttgcatgaagggaacacgtgccatgattatcttgtcaagatt |
5175912 |
T |
|
| Q |
301 |
ggtgctagatccagcagtaac |
321 |
Q |
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| T |
5175911 |
ggtgctagatccagcagtaac |
5175891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 6e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 5180493 - 5180130
Alignment:
| Q |
5 |
actatgagagactttattgaggatactacaaaaatattggtgtgtctcaatcatc-tgcatgttgagattgtagtcttgatgcatggcgttcacatgtgt |
103 |
Q |
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| T |
5180493 |
actatgagagacattattgaggacactgcaaaaatattggttt--ctcagtcatcctgcaagttgagattgtagccttgatgcatggcgttcgcatgtgt |
5180396 |
T |
|
| Q |
104 |
tggaaagaaggttcacgtaaaatcatgttacatcgactcaaaaca--cactctaaatgtttcaaagtgttggtgttactacacaacatttagaccgtgag |
201 |
Q |
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| T |
5180395 |
tggaaagaaggttcgcgtaaaatcatgttacattgactagaaacatacactccaattgtttccaattgttggtgttactacacaacatttaagcaatgag |
5180296 |
T |
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| Q |
202 |
atagtcgttatttgtcaataaatgatcaaatattggagtcttcatttgcatcaaatgtagcatgaagggaacacgtgccatgattatcttgtcaagattg |
301 |
Q |
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||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||| || ||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
5180295 |
ataatcgttattcgtcaatatatgatcaaatattggagtcttcaactgcatcaaacgttccatgaagtgaacatgtgccatgattttcttgtcaagattg |
5180196 |
T |
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| Q |
302 |
gtgctagatccagcagtaacgagctcattgttataactgatccttcgaatgagctttgtttgcttctca |
370 |
Q |
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| T |
5180195 |
gtgctagaaccagc---aacaagttaattgttatgattgatcctccaaatgagcttcgtttgcttctca |
5180130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 467 - 602
Target Start/End: Complemental strand, 5179787 - 5179656
Alignment:
| Q |
467 |
ttacattttggtaacaatcaaagcatcattaatttctgcagcttctatgcatgtaattccagaacgattaacttcaccaagttgacggtaaatcatgact |
566 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||| |||||||| |
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| T |
5179787 |
ttacattttggtaacaatcaaagcatca---atttctgcagcttcggttcatgtaattccagaaagattaacttcaccaagttgac-gtaagtcatgact |
5179692 |
T |
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| Q |
567 |
tataacacatgaaacaagcaacacaagttaccaaaa |
602 |
Q |
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| T |
5179691 |
tataagacatgaaacaagcaaaacaagttaccaaaa |
5179656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 5179956 - 5179887
Alignment:
| Q |
375 |
catgttagcctgctatcaaagaacgtgacgtacatttcatttggttattttgtttacattttataaccat |
444 |
Q |
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| T |
5179956 |
catgttagcccactatcaaagaacatgacgtacatttcatttggttattttgtttacattttataaccat |
5179887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 465
Target Start/End: Original strand, 5056047 - 5056078
Alignment:
| Q |
434 |
tttataaccattttagttatgatgtttatact |
465 |
Q |
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| T |
5056047 |
tttataaccattttagttatgatgtttatact |
5056078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 597
Target Start/End: Original strand, 5056162 - 5056239
Alignment:
| Q |
520 |
taattccagaacgattaacttcaccaagttgacggtaaatcatgacttataacacatgaaacaagcaacacaagttac |
597 |
Q |
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|||||| |||| |||||||| ||||||||||||| | |||||||||| | ||||||| || ||||| ||||||||| |
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| T |
5056162 |
taattctagaaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttac |
5056239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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