View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_high_3 (Length: 398)
Name: NF8958_high_3
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 3744092 - 3744289
Alignment:
| Q |
16 |
agagatagacagtgtttgttggtagagattagcgacgaagcttccatcaccataagcgtagtaaaaaggtggacaagaaaaagaagaacaatcagaagtt |
115 |
Q |
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| T |
3744092 |
agagagagaaagtgtttgttgatacagattagctacgaagcttccatcaccataagcatagtaaaaaggtggacaagaaaaagaagaacaatcagaagtt |
3744191 |
T |
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| Q |
116 |
tcgatgaaatctaaaggacaacgtgaaatagcacaaaggttactagaagacatggatgcatgcgctgcggaacatgcaggggattgacaagaaacaga |
213 |
Q |
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| T |
3744192 |
tcgatgtaatctaaaggacaacgtgaaatagcacaaaggttactagaagacatggatgcatgcgctgcggaacatgcaggggattgacaagaaacaga |
3744289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 3744336 - 3744456
Alignment:
| Q |
260 |
ccttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttgtggagggtttgaaccta |
359 |
Q |
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| T |
3744336 |
ccttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttgtggagggtttgaaccta |
3744435 |
T |
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| Q |
360 |
ggttgaaggagagggtgtaat |
380 |
Q |
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| T |
3744436 |
ggttgaaggagagggtgtaat |
3744456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 41705561 - 41705481
Alignment:
| Q |
262 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
342 |
Q |
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| T |
41705561 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
41705481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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