View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8958_low_13 (Length: 372)

Name: NF8958_low_13
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8958_low_13
NF8958_low_13
[»] chr3 (17 HSPs)
chr3 (32-354)||(19377178-19377500)
chr3 (181-343)||(19426262-19426424)
chr3 (181-342)||(19355288-19355449)
chr3 (181-343)||(19335584-19335745)
chr3 (163-285)||(18017683-18017805)
chr3 (166-241)||(18149095-18149170)
chr3 (163-285)||(19401389-19401511)
chr3 (195-241)||(19463399-19463445)
chr3 (106-159)||(19355457-19355510)
chr3 (219-299)||(19394762-19394842)
chr3 (225-342)||(18166727-18166844)
chr3 (106-159)||(19335753-19335806)
chr3 (197-241)||(18117970-18118014)
chr3 (206-282)||(19353034-19353110)
chr3 (206-269)||(16679007-16679070)
chr3 (163-285)||(18110055-18110177)
chr3 (1-33)||(19377527-19377559)
[»] chr2 (1 HSPs)
chr2 (198-290)||(16437505-16437598)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 32 - 354
Target Start/End: Complemental strand, 19377500 - 19377178
Alignment:
Q  32 acatttggtacaataataatagagagatataggtagaacagttgacaatatgaatgcattgattccctgaaatctgaaatgagcaggagcagctgtacag 131  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19377500 acatttggtacaataataaaagagagatatgggtagaacagttgacaatatgaatgcattcattccctgaaatctgaaatgagcaggagcagctgtacag 19377401  T
Q  132 tcatgtctgatctcatctcatacaactcttatctgtttgtaaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19377400 tcatgtctgatctcatctcatacaactcttatctgtttgtaaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgat 19377301  T
Q  232 aaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaaataaaacaaatactttataatcagatcaataaaactgtgttgtaggttaca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19377300 aaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaaataaaacaaatactttataatcagatcaataaaactgtgttgtaggttaca 19377201  T
Q  332 ctgaccttaactggcaggagctt 354  Q
    |||||||||||||||||||||||    
T  19377200 ctgaccttaactggcaggagctt 19377178  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 181 - 343
Target Start/End: Complemental strand, 19426424 - 19426262
Alignment:
Q  181 tccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaa 280  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||    
T  19426424 tccacgatttgcataaaaatgcagaatcttccacattaataatcacctgataaagattgaatcaaatgaaatggatataggttttgcatagaattacaaa 19426325  T
Q  281 ataaaacaaatactttataatcagatcaataaaactgtgttgtaggttacactgaccttaact 343  Q
    ||||||| ||||||||||| |||||||||||||||| ||  ||||||| |||| |||||||||    
T  19426324 ataaaacgaatactttatagtcagatcaataaaactatgaagtaggttccactaaccttaact 19426262  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 181 - 342
Target Start/End: Complemental strand, 19355449 - 19355288
Alignment:
Q  181 tccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaa 280  Q
    |||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  19355449 tccatgatttgcataaaaatgcagaatctttcacattaataatcacctgataaagattgaagcatatgaaatggatataagttttgcatagaattacaaa 19355350  T
Q  281 ataaaacaaatactttataatcagatcaataaaactgtgttgtaggttacactgaccttaac 342  Q
    ||||||||||||||||||| |||||||||||||||| ||  ||||||| |||| ||||||||    
T  19355349 ataaaacaaatactttatagtcagatcaataaaactatgaagtaggttccactaaccttaac 19355288  T

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Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 181 - 343
Target Start/End: Complemental strand, 19335745 - 19335584
Alignment:
Q  181 tccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaa 280  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| | |||||||||||||| ||||||||    
T  19335745 tccacgatttgcataaaaatgcagaatcttccacattaataatcacctggtaaagattcaaacaaatgaaatgg-tataagttttgcatagaattacaaa 19335647  T
Q  281 ataaaacaaatactttataatcagatcaataaaactgtgttgtaggttacactgaccttaact 343  Q
    |||||||||||||| |||| |||||| ||||||||| ||  ||||||| |||| |||||||||    
T  19335646 ataaaacaaatactctatagtcagattaataaaactatgaagtaggttccactaaccttaact 19335584  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 18017805 - 18017683
Alignment:
Q  163 tctgtttgtaaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagt 262  Q
    |||||||| ||||| ||||| |||||||||| || | ||||| |||||||||||  ||||||||||||||||   |||||||||  |||||||| |||||    
T  18017805 tctgtttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagt 18017706  T
Q  263 tttgcatagtattacaaaataaa 285  Q
    | ||||||| |||||||||||||    
T  18017705 tatgcatagaattacaaaataaa 18017683  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 18149170 - 18149095
Alignment:
Q  166 gtttgtaaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaa 241  Q
    ||||| ||||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||    
T  18149170 gtttggaaaattatatccacgatttgcaaaaaaatgcagaatcttgtacattaataatcacctgataaagattgaa 18149095  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 19401511 - 19401389
Alignment:
Q  163 tctgtttgtaaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagt 262  Q
    |||||||| ||||| ||||| | ||||| || || ||||||| |||||||||||  ||||||||||||||||   |||||||||  ||||||||  ||||    
T  19401511 tctgtttggaaaattatatcaaagatttgcataacaatgcaggatcttccacatgcataatcacctgataaaatatgaagcaaacaaaatggataaaagt 19401412  T
Q  263 tttgcatagtattacaaaataaa 285  Q
    | ||||||| |||||||||||||    
T  19401411 tatgcatagaattacaaaataaa 19401389  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 19463445 - 19463399
Alignment:
Q  195 aaaaatgcagaatcttccacattaataatcacctgataaagattgaa 241  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19463445 aaaaatgcagaatcttctacattaataatcacctgattaagattgaa 19463399  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 19355510 - 19355457
Alignment:
Q  106 tgaaatgagcaggagcagctgtacagtcatgtctgatctcatctcatacaactc 159  Q
    |||||||||||| | || |||||||||||||| |||||||||||||||||||||    
T  19355510 tgaaatgagcagcaacaactgtacagtcatgtatgatctcatctcatacaactc 19355457  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 19394842 - 19394762
Alignment:
Q  219 ataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaaataaaacaaatactttata 299  Q
    ||||||||||||||||   |||| |||||||||||||| ||||||||   ||| |||||| ||| ||||||||||||||||    
T  19394842 ataatcacctgataaaatatgaaacaaatgaaatggatgtaagtttttattagaattacataatgaaacaaatactttata 19394762  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 342
Target Start/End: Complemental strand, 18166844 - 18166727
Alignment:
Q  225 acctgataaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaaataaaacaaatactttataatcagatcaataaaactgtgttgta 324  Q
    ||||||||||   |||| |||||||||||||| ||||||||| |||| |||||| ||  |||||||||||  ||| |  ||| ||||||||| ||  |||    
T  18166844 acctgataaaatatgaaacaaatgaaatggatgtaagttttgaatagaattacataaggaaacaaatactcaatattttgattaataaaactttgaagta 18166745  T
Q  325 ggttacactgaccttaac 342  Q
    |||| |||| ||||||||    
T  18166744 ggtttcactaaccttaac 18166727  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 19335806 - 19335753
Alignment:
Q  106 tgaaatgagcaggagcagctgtacagtcatgtctgatctcatctcatacaactc 159  Q
    |||||||||||| | || |||||||||||||| | |||||||||||||||||||    
T  19335806 tgaaatgagcagcaacaactgtacagtcatgtataatctcatctcatacaactc 19335753  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 18118014 - 18117970
Alignment:
Q  197 aaatgcagaatcttccacattaataatcacctgataaagattgaa 241  Q
    ||||||||||||||| |||||||||||||||| || |||||||||    
T  18118014 aaatgcagaatcttctacattaataatcacctaattaagattgaa 18117970  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 19353110 - 19353034
Alignment:
Q  206 atcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcatagtattacaaaat 282  Q
    |||||||||||  ||||||||||||||||   |||||||||  ||||| || |||||| ||||||| ||||||||||    
T  19353110 atcttccacatacataatcacctgataaaatatgaagcaaacaaaatgtatataagttatgcatagaattacaaaat 19353034  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 16679070 - 16679007
Alignment:
Q  206 atcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcat 269  Q
    |||||||||||  |||||||||||| |||   ||||||||||||||||||| |||||| |||||    
T  16679070 atcttccacatgcataatcacctgagaaaatatgaagcaaatgaaatggatataagttatgcat 16679007  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 18110177 - 18110055
Alignment:
Q  163 tctgtttgtaaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagt 262  Q
    |||||||| ||||| ||||| ||||||| || |  | || || |||||||||||  |||||||| ||| |||   |||||||||  || ||||| |||||    
T  18110177 tctgtttgaaaaattatatcaacgatttgcatagcagtgtaggatcttccacatacataatcacttgacaaaatatgaagcaaacaaattggatataagt 18110078  T
Q  263 tttgcatagtattacaaaataaa 285  Q
    | ||||||| |||||||||||||    
T  18110077 tatgcatagaattacaaaataaa 18110055  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19377559 - 19377527
Alignment:
Q  1 ataaaaagaagtaatccactttctcaacaaaac 33  Q
    ||||||||||||||||||||||||| |||||||    
T  19377559 ataaaaagaagtaatccactttctccacaaaac 19377527  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 16437598 - 16437505
Alignment:
Q  198 aatgcagaatcttccacattaataatcacctgataaagat-tgaagcaaatgaaatggatttaagttttgcatagtattacaaaataaaacaaa 290  Q
    ||||||| |||| ||||||  |||||||||||| ||| || ||||| ||||  ||||||| |||||||||||||| |||||| | |||||||||    
T  16437598 aatgcaggatctcccacatgcataatcacctgaaaaaaatatgaagaaaattcaatggatataagttttgcatagaattacatagtaaaacaaa 16437505  T

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