View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_17 (Length: 354)
Name: NF8958_low_17
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 40425247 - 40425580
Alignment:
| Q |
4 |
tcattcattgcgaattaattaaacgtgaatcataagtagttgaagatatgcatccacacgagtatccaatactatatttggtagaacaagttgtcattta |
103 |
Q |
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| T |
40425247 |
tcattcattgcgaattaattaaacgtgaatcataagtagttgaagatatgcatccacacgagtatccaatactatatttggtagaacaagttgtcattta |
40425346 |
T |
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| Q |
104 |
gtcacaactcacaaacaataatcataagaa-ttttatatatagaatggatccaccacaaaacgacaaaggaaacaatataaaaataaatacacaacattg |
202 |
Q |
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| T |
40425347 |
gtcacaactcacaaacaataatcataagaatttttatatatagaatggatccaccacaaaacgacaaaggaaacaatataaaaataaatacacaacattg |
40425446 |
T |
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| Q |
203 |
tcattcaatcttcacaacgtgaaagagggatgaaacagatctatcagaatagtcaaatcctctnnnnnnnntccctcttgtgtgaagaaaaagaaaagag |
302 |
Q |
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| T |
40425447 |
tcattcaatcttcacaacgtgaaagagggatgaaacagatctatcagaatagtcaaagcctctaaaaaaaatccctcttgtgtgaagaaaaagaaaagag |
40425546 |
T |
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| Q |
303 |
atgcagagttctnnnnnnntgccattgtgcaaaa |
336 |
Q |
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| T |
40425547 |
atgcagagttctaaaaaaatgccattgtgcaaaa |
40425580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 40440556 - 40440809
Alignment:
| Q |
1 |
atctcattcattg---cgaattaattaaacgtgaatcataagtagttgaagatatgcatccacacgagtatccaatactatatttggtagaacaagttgt |
97 |
Q |
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| T |
40440556 |
atctcattcattgtgacgaattaattaaacgtgaatcataagtagttgaagatatgcatccacacgagaatccaatactatatttggtagaacaagttgt |
40440655 |
T |
|
| Q |
98 |
catttagtcacaactcacaaacaataatcataagaattttatatatagaatggatccaccacaaaacgacaaaggaaacaatataaaaataaataca--c |
195 |
Q |
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| T |
40440656 |
catttag-------tcacaatcaataatcataag----ttttatatagaacgaatccatcacaaaacgacaaaagaaacattataaaaataaatacaatc |
40440744 |
T |
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| Q |
196 |
aacattgtcattcaatcttcacaacgtgaaagagggatgaaacagatctatcagaatagtcaaat |
260 |
Q |
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| T |
40440745 |
aacattgttattcaatctccacaacgtgaaagagggacgaaacagatctatctgaatagtcaaat |
40440809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31851269 - 31851338
Alignment:
| Q |
1 |
atctcattcattgcgaattaattaaacgtgaatcataagtagttgaagatatgcatccacacgagtatcca |
71 |
Q |
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| T |
31851269 |
atctcattcatcgtgaattaagtaaatgtgaatca-aagtagttgaagatattcatcgacatgagtatcca |
31851338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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