View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_2 (Length: 681)
Name: NF8958_low_2
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Complemental strand, 4803408 - 4802741
Alignment:
| Q |
1 |
gaaactcaacacagtttgtcacttcccctagacacaatgatgatttttcaagtaaacgaggtcacaccgcgaaaactaatcacagatcagtcttgggaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
4803408 |
gaaactcaacacagtttgtcacttcccctagacacaatgatggtttttcaagtaaacaaggtcacaccacgaaaaccaatcacagatcagtcttgggaca |
4803309 |
T |
|
| Q |
101 |
aatataagacacatagtgaatgaatgccatgcctgaagactaagcaccaacatctagcacctcacttcatctttaaatcaatcacaggcatatttttata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4803308 |
aatataagacacatagtgaatgaatgccatgcctgaagactaagcaccaacatctagcacctcacttcatctttaaatcaatcacaagcatatttttata |
4803209 |
T |
|
| Q |
201 |
gtaaacaatcattatgctaacccctatgaagtgtatataacaatttaccacaatgaattcaagtgcacaaatcttatacgcaagaaacatagtatgatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803208 |
gtaaacaatcattatgctaacccctatgaagtgtatataacaatttaccacaatgaattcaagtgcacaaatcttatacgcaagaaacatagtatgatgg |
4803109 |
T |
|
| Q |
301 |
aagcaaaagctattttaatcaatcttttcccaataaaaacaccttttataagttctagtcaataattatcgcttaaacctataactaaattagaaggaat |
400 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||| |
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| T |
4803108 |
aagcaaaagttattttaatcaatcttttcccaataaaaacagcttttataagttctagtcaataattatcacttaaacctataacaagattagatggaat |
4803009 |
T |
|
| Q |
401 |
a-tataaatgt--tnnnnnnnnnnnntcattactgatccccaaaagcttcttatatggcaagtcctgtggaatgctttaacgaagaaacaaatgcatata |
497 |
Q |
| |
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| ||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
4803008 |
attataaatgtaaaaaaaaaaaaaaatcattattgatccccaaaagcttcttatatggcaagtcccgcggaatgctttaactaagaaacaaatgcatata |
4802909 |
T |
|
| Q |
498 |
tagttatatactaagatcagaaaggacatgaatgtaaagtaacccaaaccaagcatgattaagctctcaaagacaatcgtgaatcagtaatgaaatacac |
597 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4802908 |
tagttatatactaagatcagaaaggatatgaatgtaaagtaacccaaaccaagcatgattaagctctcaaagacaattgtgaatcagtaatgaaatacac |
4802809 |
T |
|
| Q |
598 |
agaacattcaagagaaacaacctgatatgctttcaaggactgatcagcagcctctttcctctcatcac |
665 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4802808 |
agaacattcaagagaaacaacctgatatgctttcaaggactgatcagcagcctctttcctctcatcac |
4802741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 21167701 - 21167591
Alignment:
| Q |
137 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcacaggcatatttttatagtaaacaatcattatgctaacccctatgaagtgtat |
236 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||||| || | |||||||| ||| ||||| |||| |||| | |||||||| |
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|
| T |
21167701 |
agactaagcactaatgtctagcacctcacttcatctttaaattaatcacaaccaaagttttatagcttccaaccattagactaaaccctgtaaagtgtat |
21167602 |
T |
|
| Q |
237 |
ataacaattta |
247 |
Q |
| |
|
||||||||||| |
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|
| T |
21167601 |
ataacaattta |
21167591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 11578930 - 11578881
Alignment:
| Q |
137 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcaca |
186 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
11578930 |
agactaaggactaacatctagtacctcacttcatctttaaatcaatcaca |
11578881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 31714759 - 31714710
Alignment:
| Q |
137 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcaca |
186 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
31714759 |
agactaaggactaacgtctagtacctcacttcatctttaaatcaatcaca |
31714710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 2595124 - 2595173
Alignment:
| Q |
137 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcaca |
186 |
Q |
| |
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|||||||| || ||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
2595124 |
agactaaggactaacgtctagtacctcacttcatctttaaatcaatcaca |
2595173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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