View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8958_low_22 (Length: 312)

Name: NF8958_low_22
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8958_low_22
NF8958_low_22
[»] chr6 (1 HSPs)
chr6 (1-294)||(34429887-34430177)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 34429887 - 34430177
Alignment:
Q  1 cataacatgtaacatggaaaacaaaacaagcactctactagtaatctcataataaacttaaacagtccagacagagacaataatacaagaactataaaca 100  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34429887 cataacatgtaacatggaaaacaaaacaagcactcta---gtaatctcataataaacttaaacagtccagacagagacaataatacaagaactataaaca 34429983  T
Q  101 agtatcagcggttgagatcttaacttaccgaagtacctatcttatcttttgaaacaaggtcatcatccaccaaactttggaccacatctttaacagactg 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34429984 agcatcagcggttgagatcttaacttaccgaagtacctatcttatcttttgaaacaaggtcatcatccaccaaactttggaccacatctttaacagactg 34430083  T
Q  201 actaatcacacccttcttggggcccatcttctcaagctccttaagctgaaaatcagcaaaacaacaatagcaacaacaaagtcatataaagcag 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34430084 actaatcacacccttcttggggcccatcttctcaagctccttaagctgaaaatcagcaaaacaacaatagcaacaacaaagtcatataaagcag 34430177  T

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