View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_23 (Length: 298)
Name: NF8958_low_23
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27842442 - 27842395
Alignment:
| Q |
1 |
caactccaagctcacgctgaaaaagtttttggactggtaagtataatc |
48 |
Q |
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| T |
27842442 |
caactccaagctcacgctgaaaaagtttttggactggtaagtataatc |
27842395 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34685904 - 34685950
Alignment:
| Q |
1 |
caactccaagctcacgctgaaaaagtttttggactggtaagtataat |
47 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| |||| |
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| T |
34685904 |
caactccaagctcacgctgaaaaagtttttggaatggtgagtgtaat |
34685950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 18270862 - 18270908
Alignment:
| Q |
2 |
aactccaagctcacgctgaaaaagtttttggactggtaagtataatc |
48 |
Q |
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|
|||||||||| ||||||||||||||||||||| |||| ||| ||||| |
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| T |
18270862 |
aactccaagcccacgctgaaaaagtttttggaatggtgagtttaatc |
18270908 |
T |
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