View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_24 (Length: 264)
Name: NF8958_low_24
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 18576159 - 18576405
Alignment:
| Q |
1 |
ttgaatctagacatgaatattcctcaacacttcaactcatgacgaaaatgttttatcgtccatcgtagacctacccgactcgagaaattattgttgcata |
100 |
Q |
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| T |
18576159 |
ttgaatctagccatgaatattcctcaacacttcaactcgtgacaaaaatgctttgccgtccatcgtagacctacccgactcgagaaattattgttgcata |
18576258 |
T |
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| Q |
101 |
tacttgatttatgccaacaatttcaatgcaaaaacttgatgatactaggaaaagccacatatcgcggataatactacccacctatattcatgaccttgat |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18576259 |
tacttgatttaagccaacaatttcaatgcaaaaacttgatgatactaggaaaagccacatatcgcggatgatactacccacctatattcatgaccttgat |
18576358 |
T |
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| Q |
201 |
tatagcgttggtattcataagtaccaccaaaactttcatgatcttat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18576359 |
tatagcgttggtattcataagtaccaccaaaactttcatgatcttat |
18576405 |
T |
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