View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_27 (Length: 252)
Name: NF8958_low_27
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 12499655 - 12499432
Alignment:
| Q |
19 |
tgacacgatttcatgttgtgcagtttgggtgagtcactaaaaatatcatagaacgattgttggatataacagtcaattcatattgcgcaatgaattagaa |
118 |
Q |
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| T |
12499655 |
tgacacgatttcacgttgtgcagtttgggtgagtcactaaaaataacgtagaacgattgttggatataacagtcaattcatattgcacaatggattagaa |
12499556 |
T |
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| Q |
119 |
aatcgtaactcattatttgttccgaacttctctcttaaaattaattctatatatgttagcaacacatcttgtagcatctttaaaatcaaagttgcaagca |
218 |
Q |
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| T |
12499555 |
aatggtaactcattatttgttccgaacttgtctcttaaaattaattctctatatgttagcaacacatcttgtagcatctttaaaatcaaagttgcaagca |
12499456 |
T |
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| Q |
219 |
tatcattcattttcagtttctctg |
242 |
Q |
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||||||||||||||||||| |||| |
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| T |
12499455 |
tatcattcattttcagtttatctg |
12499432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 19065048 - 19064924
Alignment:
| Q |
116 |
gaaaatcgtaactcattatttgttccgaacttctct-cttaaaattaattctatatatgttagcaacacatcttgtagcatctttaaaatcaaagttgca |
214 |
Q |
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|||||| |||||||||||||| |||||||| | ||| ||||||||||||| | | ||||| |||| ||||| | || ||| || | ||||||||||||| |
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| T |
19065048 |
gaaaatggtaactcattatttcttccgaacatgtctccttaaaattaattttctctatgtcagcagcacattctataccattttcagaatcaaagttgca |
19064949 |
T |
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| Q |
215 |
agcatatcattcattttcagtttct |
239 |
Q |
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| T |
19064948 |
tccatacccttcattgttagtttct |
19064924 |
T |
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