View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_28 (Length: 252)
Name: NF8958_low_28
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 48710921 - 48710695
Alignment:
| Q |
10 |
tagattatactacagaaatttcctctaataatagtcttggccttgaaagcttctggggtctttttctgatagcagggattgcttccctattagcactcct |
109 |
Q |
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| T |
48710921 |
tagattctaatacagaaatttcctctaataatagtcttggccttgaaagcttctggggtctttttctgatagcagggattgcttccctattagcactcct |
48710822 |
T |
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| Q |
110 |
aatctttgtggtaacatttctacatcagcacaaacacatttggttaaacaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatg |
209 |
Q |
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| T |
48710821 |
aatctttgtggtaacatttctacatcagcacaaacacatttggttaaacaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatg |
48710722 |
T |
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| Q |
210 |
tttgatcaaagagacatgagtagtcac |
236 |
Q |
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| T |
48710721 |
tttgatcaaagagacttgagtagtcac |
48710695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 48699442 - 48699239
Alignment:
| Q |
21 |
acagaaatttcctctaataatagtcttggccttgaaagcttctggggtctttttctgatagcagggattgcttccctattagcactcctaatctttgtgg |
120 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
48699442 |
acagaaatttcctcaaataacagtcttggacttgaaagcttttggggtctgtttctcattgcagggattgcttccctattagcactcctaatctttgtta |
48699343 |
T |
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| Q |
121 |
taacatttctacatcagcacaaacacatttggttaaacaataatccaagtaattcaatatggagacgaattgaagtcgtgtttaggatgtttgatcaaag |
220 |
Q |
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| T |
48699342 |
tcacattcctatatcaacacaaacacatttggctacccaatagtccaagtaattcaatatggagacgaattcgcgtcttggtaatgatatttgatcaaag |
48699243 |
T |
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| Q |
221 |
agac |
224 |
Q |
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|||| |
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| T |
48699242 |
agac |
48699239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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