View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8958_low_30 (Length: 249)
Name: NF8958_low_30
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 45540702 - 45540826
Alignment:
| Q |
19 |
agaaaggacaacagggagtggatgatactatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45540702 |
agaaaggacaacagggagtggatgatactatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaa |
45540801 |
T |
|
| Q |
119 |
tgtcacaggtaatgcaaatcaagat |
143 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
45540802 |
tgtcacaagtaatgcaaatcaagat |
45540826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 45540897 - 45541010
Alignment:
| Q |
136 |
atcaagattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgccgat |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540897 |
atcaacattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgccgat |
45540996 |
T |
|
| Q |
236 |
acaattgatggagc |
249 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45540997 |
acaattgatggagc |
45541010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University