View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_33 (Length: 208)
Name: NF8958_low_33
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 30594503 - 30594330
Alignment:
| Q |
18 |
attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatgnnnnnnngcataaactcaaatgttacattgac |
117 |
Q |
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| T |
30594503 |
attctggaggcactggcagatgtattttgagtgatatttgtaacttcagtttccatgaaactcaaatgtttttttgtataaactcaaatgttacattgac |
30594404 |
T |
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| Q |
118 |
agctatatttcaatatgcaacctatatttcacgggatggaggatacactcgtgacaacataaataacatttgtt |
191 |
Q |
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| T |
30594403 |
agctatatttcaatatgcaacctatatttcacgggatggaggatacactcgtgacaacataaataacttttgtt |
30594330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6846131 - 6846197
Alignment:
| Q |
18 |
attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatg |
85 |
Q |
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| T |
6846131 |
attctggaggcactggcagatgta-tttgagtgatgtttgtaactcaagttttcatgaaactcaaatg |
6846197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6852798 - 6852864
Alignment:
| Q |
18 |
attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatg |
85 |
Q |
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| T |
6852798 |
attctggaggcactggcagatgta-tttgagtgatgtttgtaactcaagttttcatgaaactcaaatg |
6852864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6892293 - 6892359
Alignment:
| Q |
18 |
attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatg |
85 |
Q |
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| T |
6892293 |
attctggaggcactggcagatgta-tttgagtgatgtttgtaacttaggttttcatgaaactcaaatg |
6892359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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