View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_6 (Length: 537)
Name: NF8958_low_6
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 15 - 513
Target Start/End: Original strand, 36408409 - 36408908
Alignment:
| Q |
15 |
agcacagatacaagatcagaccgagtcgaagcttggcggtgaaagaagcactgaaatgtaaattgatattttcactctgtgcctttttaagtttgtttaa |
114 |
Q |
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| T |
36408409 |
agcacagatacaagatcagaccgagtcgaagcttggcggtgaaagaagcactgaaatgtaaattgatattttcacactgtgcctttttaagtttgtttaa |
36408508 |
T |
|
| Q |
115 |
agtataaggttgcaaatttctaagggaattctgtgaagtgattcattccagtatgttttctatacttcccgtgtttgtttaacttatatctgtttctcat |
214 |
Q |
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| T |
36408509 |
agtataaggttgcaaatttctaagggaattctgtgaagtgattcattccagtatgttttctatacttcctgtgtttgtttaacttatatctgtttctcat |
36408608 |
T |
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| Q |
215 |
tctatcagaagnnnnnnncttatctgtttttcaataatatcaatattatgatcacactaccattgtaatgaaatctgattccttcattcacaataagttt |
314 |
Q |
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| T |
36408609 |
tctatcagaagaaaaaaacttatctgtttttcaataatatcaatattatgatcacactaccattgtaatgaaatatgattccttcattcacaataagttt |
36408708 |
T |
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| Q |
315 |
gacatgttcttacatagctaagttggtaatatactatgctacgtgtttaa-tttgagtggaaccnnnnnnnnattgggccatgatagtgaaattaaaact |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36408709 |
gacatgttcttacatagctaagttggtaatatactatgctacgtgtttaattttgagtggaaccttttttttattgggccatgatagtgaaattaaaact |
36408808 |
T |
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| Q |
414 |
ttacaaacataaaagaaataaacaatactgtatggttgattttggaggaatcaatcaaggtccacaaaaatagacccattgatggcatttttatggaggt |
513 |
Q |
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| T |
36408809 |
ttacaaacataaaagaaataaacaatactgtatggttgattttggaggaatcaatcaaggtccacaaaaatagacccattgatggcatttttatggaggt |
36408908 |
T |
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