View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8958_low_7 (Length: 425)
Name: NF8958_low_7
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 122 - 341
Target Start/End: Original strand, 41342185 - 41342404
Alignment:
| Q |
122 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342185 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
41342284 |
T |
|
| Q |
222 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342285 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
41342384 |
T |
|
| Q |
322 |
caaaaagttatataatgaga |
341 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41342385 |
caaaaagttatataatgaga |
41342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 41342142 - 41342187
Alignment:
| Q |
19 |
cattgccctgaaaattaacatcaaatatcaaatgctttattttataa |
65 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41342142 |
cattgccctgaaaattaacatc-aatatcaaatgctttattttataa |
41342187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 417
Target Start/End: Original strand, 41342449 - 41342488
Alignment:
| Q |
378 |
aaattaagtaagctttataactcaccttctctctgcttct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41342449 |
aaattaagtaagctttataactcaccttctctcggcttct |
41342488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University