View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8958_low_8 (Length: 417)
Name: NF8958_low_8
Description: NF8958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8958_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 36365976 - 36366119
Alignment:
| Q |
16 |
atatgattgagaaaattttgttgttttcaagtgggtgattatgttgcatccagagttactaatcttttgttctaaaacataaattagataggttctgaat |
115 |
Q |
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| T |
36365976 |
atatgattgagaaaattttgttgttttcaagtgggtgattatgttgcatccagagttactaatcttttgttctaaaacataaattagataggttctgaat |
36366075 |
T |
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| Q |
116 |
tagcatcactattaaagaaaagtcaacatatttttgtataagca |
159 |
Q |
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| T |
36366076 |
tagcatcactactaaagaaaagtcaacatatttttgtataagca |
36366119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 36366365 - 36366507
Alignment:
| Q |
208 |
agtgtaaacagcaattctcttgaaatgggtccatcaaacccatgttctagtgtaagaagcccaacccacaaaataccaaaaccctaaaactctgaaaacg |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
36366365 |
agtgtaaacagcaattttcttgaaatgggtccatcaaacccatgttctagtgtaagaagcccaacccacaaaatacaaaaaccct-aaactctgaaaacg |
36366463 |
T |
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| Q |
308 |
ggttaacttaagcgcattgctctcatttctttcgtgcggcttca |
351 |
Q |
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| T |
36366464 |
ggttaacttatgcgcattgctctcatttctttcgtgcggcttca |
36366507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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