View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_13 (Length: 389)
Name: NF8959_high_13
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 22640166 - 22639982
Alignment:
| Q |
18 |
aaatttttcgtggtgaaccactagatactgctc-tatacaatagttggctcaggtggctgtgtaatttgtggcaggccacttatttcaattttgggtttg |
116 |
Q |
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| T |
22640166 |
aaattttttgtggtgaaccactagatactgctcctatacaatagttggctcaggtggctgtgtaatttgtggcaggtcacttatttcaattttgggtttg |
22640067 |
T |
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| Q |
117 |
tgcagaaattattttgttattactggctgtgccttcataacagataattatttttcgacataataatatataaggtttcaggaat |
201 |
Q |
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| T |
22640066 |
tgcagatattattttgttattactggctgtgccttcataacagataattatttttcgacataataatatataaggtttcaggaat |
22639982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 22639926 - 22639771
Alignment:
| Q |
199 |
aatttaataacttataagcctaaaatgaagctcaaccaacttatacctatcagctttaacaactttcccttctattatagcaaggacaccaa----tata |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22639926 |
aatttaataacttataagcctaaaatgaagctcaaccaacttatacctatcggctttaacaactttcccttctattatagcaaggacaccaatatatata |
22639827 |
T |
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| Q |
295 |
agataggtgctgtatagatgtggttcttgagagcaaaaatgaagctaatgatgcat |
350 |
Q |
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| T |
22639826 |
agataggtgctgtatagatgtggttcttgagaggaaaaatgaagctaatgatgcat |
22639771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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