View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8959_high_17 (Length: 345)
Name: NF8959_high_17
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 12635120 - 12635448
Alignment:
| Q |
1 |
aaagaagtaccttgctagttgatacacaatgccacaatgtgattcctgaaacatggtcacttacgatatgagaagctgtcaaaattgattttatcaaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12635120 |
aaagaagtaccttgctagttgatacacaatgccacaatgtgattcctgaaacatggtcacttacgatatgagaagctgtcaaaattgattttatcaaact |
12635219 |
T |
|
| Q |
101 |
attgttcctttgattcaaacctgtatcgattaaagtcctagatggatgaattggacccgattactattgaaagaggaagtgaactgcacatgcgacaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12635220 |
attgttcctttgattcaaacctgtatcgattaaagtcctagatggatgaattggacccgattactattgaaagaggaagtgaactgcacatgcgacaata |
12635319 |
T |
|
| Q |
201 |
gtcttgcccacgacaaaagattcaaagtcggagctagatacacctttgatggcattggaaccatgggcaacgttaaaactggttatcttcttactgatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12635320 |
gtcttgcccacgacaaaagattcaaagtcggagctagatacacctttgatggcattggaaccatgggcaacgttaaaactggttatcttcttactgatac |
12635419 |
T |
|
| Q |
301 |
aattcttggagtgactttattgacatagg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12635420 |
aattcttggagtgactttattgacatagg |
12635448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 25432827 - 25432723
Alignment:
| Q |
77 |
tgtcaaaattgattttatcaaaccattg-ttcctttgattcaaacctgtatcgattaaagtcctagatggatgaattggacccgattactattgaaagag |
175 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| | ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25432827 |
tgtcgaaattgattttatcaaaccattgattcatgtgattgaaacctgtattgattaaagtcctagatggatgaattggaccagattactattgaaagag |
25432728 |
T |
|
| Q |
176 |
gaagt |
180 |
Q |
| |
|
||||| |
|
|
| T |
25432727 |
gaagt |
25432723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University