View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_18 (Length: 303)
Name: NF8959_high_18
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 88 - 284
Target Start/End: Complemental strand, 7774059 - 7773862
Alignment:
| Q |
88 |
ttgagaataaacaagacaatattgaactatttgatgatatgtcatgatgttttaatagtgttttttagattttgtattgaaccgttcattatgtttccta |
187 |
Q |
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| T |
7774059 |
ttgagaataaacaagacaatattgaaccaattaatgatatgtcatgatgttttaatagtgttttttagattttgtattgaactattcattatgtttccta |
7773960 |
T |
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| Q |
188 |
tttgatacaatatttgttaaacatgttttgagaattgtgagaa-ttaagcttttagctttgattatatcataaactgttttgtgaattgcgagaacct |
284 |
Q |
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| T |
7773959 |
tttgatacaatatttgttaaacttgttttgagaattgtgagaatttaagcttttagctttggttttatcgtaaactgttttgagaattgcgagaacct |
7773862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 52411433 - 52411512
Alignment:
| Q |
207 |
aacatgttttgagaattgtgagaattaagcttttagctttgattatatcataaactgttttgtgaattgcgagaacctta |
286 |
Q |
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| T |
52411433 |
aacatgttttgagaattgtgagaattaagcttttagctttgattatatcataaactgttttgtgaattgcaagaacctta |
52411512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 52411384 - 52411435
Alignment:
| Q |
5 |
gtttggtgttgacatctgaagtgatgtcttaatgaagaagtctgactggaac |
56 |
Q |
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| T |
52411384 |
gtttggtgttgacatctgaagtgatgtcttaatgaagaagtctgactggaac |
52411435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 40384197 - 40384103
Alignment:
| Q |
157 |
ttttgtattgaaccgttcattatgtttccta-tttgatacaatatttgttaaacatgttttgagaattgtgagaattaagcttttagctttgatt |
250 |
Q |
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| T |
40384197 |
ttttgtattcaaccattctttatgtttcctactttgatacaatctttgttaaatatgttttgagaaatgtgagaattcaatatttagctttgatt |
40384103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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