View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_19 (Length: 303)
Name: NF8959_high_19
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_19 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 134526 - 134811
Alignment:
| Q |
18 |
atccatgaataggggacaggctacagatgcaagtatggcagccactcttttgaaaagaggagaaccgttgctttgcgcatcaacaatcacagtatgtatt |
117 |
Q |
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| T |
134526 |
atccatgaataggggacaggctgcaaatgcaagtatggcagccactcttttgaaaagaggagaaccgttgctttgcgcatcaacaatcacaatatttata |
134625 |
T |
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| Q |
118 |
gatcatttccaatcatcttaatcattattcgtacacgtcaagaaaaaacttaatcattattttctccctataatcatgataatgatagtagtcaccatga |
217 |
Q |
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| T |
134626 |
gattatttccaatcatcttaatcattattcgtacacgtaaaaaaaaaacttaatcattattttctccctataatcatgataatgatagtagtcaccacga |
134725 |
T |
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| Q |
218 |
cacctattcaaacttaggtgacctctagccgcctaattgcaccttttgagttgccttcattgcaacctctaacatcttcttttatt |
303 |
Q |
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| T |
134726 |
cacctattcaaacttaggtgacctctagccgcctaattgcaccttttgagttgccttcattgcaacctctaacaccttcttttatt |
134811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 112132 - 112276
Alignment:
| Q |
62 |
ctcttttgaaaagaggagaaccgttgctttgcgcatcaacaatcacagtatgtattgatcatttccaatcatcttaatcattattcgtacacgtcaagaa |
161 |
Q |
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| T |
112132 |
ctcttttgaaaggaggagatttgttgctttgcacatcaagaatcacaatatgtattgatcattttcttacaacttaatcattaatctt--tcgtaccaaa |
112229 |
T |
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| Q |
162 |
aaaacttaatcattattttctccctataatcatgataatgatagtag |
208 |
Q |
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| T |
112230 |
aaatcataatcataattttctccctataatcatgataatgatggtag |
112276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 18872536 - 18872616
Alignment:
| Q |
61 |
actcttttgaaaagaggagaaccgttgctttgcgcatcaacaatcacagtatgtat--tgatcatttccaatcatcttaat |
139 |
Q |
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| T |
18872536 |
actcttttgaaaggaggataactgttgctttgtgcatcaacaatcacagtatgtattataatcatttcctatcaacttaat |
18872616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 2043818 - 2043881
Alignment:
| Q |
62 |
ctcttttgaaaagaggagaaccgttgctttgcgcatcaacaatcacagtatgtattgatcattt |
125 |
Q |
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| T |
2043818 |
ctctttagaaaggaggagaaatgttgctttgtgcatcaacaatcattgtatgtatttatcattt |
2043881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 5987 - 6159
Alignment:
| Q |
61 |
actcttttgaaaagaggagaaccgttgctttgcgcatcaacaatcacagtatgtattgatcatttccaatcatcttaatcattattcgtacacgtcaaga |
160 |
Q |
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| T |
5987 |
actcttttgaaaggaggataactgttgctttgtgcatcaagaatcatagtatgtattgatcatttcctatcagcttaataattattcgtacttgccta-a |
6085 |
T |
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| Q |
161 |
aaaaacttaatcattattttctccctataatcatgataatgatagtagtcaccatgacacctattcaaacttag |
234 |
Q |
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| T |
6086 |
aaatacttaataatcattttcttcctatattcatgataatgatagtaggcaccaccacacctattcaaacttag |
6159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 48046278 - 48046335
Alignment:
| Q |
239 |
cctctagccgcctaattgcaccttttgagttgccttcattgcaacctctaacatcttc |
296 |
Q |
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| T |
48046278 |
cctctagccgcctaattgtagcattggggttgccttcattgcaacctccaacaccttc |
48046335 |
T |
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