View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_20 (Length: 290)
Name: NF8959_high_20
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 8831835 - 8832094
Alignment:
| Q |
15 |
ataaacgttgaaaagagttacggacctgacctgcatggatcctaaacttccggatcataggtattgggttatgtgtttggactttaggtgctgtatgagt |
114 |
Q |
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| T |
8831835 |
ataaacgttgaaaagcgttacggacctgacctgcatggatcctaagcttccggatcataggtattgggttatgtgtttggactttgggtgctgtatgagt |
8831934 |
T |
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| Q |
115 |
ggaatttaaggttttagtacagtctaaaacaatacacttacgtataaattatagaaaacatataaactttcaactccttaaagaaatgtatataaacttt |
214 |
Q |
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| T |
8831935 |
ggaatttaaggttttagtacagtctaaaacaatacacttacatataaattatagaaaacatataaactttcaactccttaaagaaatgtatataaacttt |
8832034 |
T |
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| Q |
215 |
caatctaacggttgggtggtgtaatattcttataatatattatactgatatatttgatct |
274 |
Q |
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| T |
8832035 |
caatctaacggttgggtggtttaatattcttataatatattatactgatatatttgatct |
8832094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 6968128 - 6968000
Alignment:
| Q |
106 |
tgtatgagtggaatttaaggttttagtacagtctaaaacaatacacttacgtataaatt-atagaaaaca---------tataaactttcaactccttaa |
195 |
Q |
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| T |
6968128 |
tgtatgagttgaatttagggttttagtccagtctaaaataatacacatacatataaatttatagaaatgagctgtataatataaactttcaattccttaa |
6968029 |
T |
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| Q |
196 |
agaaa-tgtatataaactttcaatctaac |
223 |
Q |
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| T |
6968028 |
aaaaaatgtatataaactttcgatctaac |
6968000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 6968281 - 6968219
Alignment:
| Q |
25 |
aaaagagttacggacctgacctgcatggatcctaaacttccggatcat---aggtattgggtt |
84 |
Q |
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| T |
6968281 |
aaaagcgttacggacctgacctacatggatcctaagcttcctgatcattgaaggtattgggtt |
6968219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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