View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_25 (Length: 229)
Name: NF8959_high_25
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_25 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 5742100 - 5742334
Alignment:
| Q |
6 |
atatcgttgattctatttaacatccaaggttgtccatatatttaacctcttactattaatcaggtctttacattttaaaaagttacaatgaatttggtgt |
105 |
Q |
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| T |
5742100 |
atatcgttgattctatttaacatccaaggttgtccatatatttaacctcttactattaatcaggtctttacattttaaaaagttacagtgaatttggtgt |
5742199 |
T |
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| Q |
106 |
ataaca---------taacatactctcaaaatgaacctctttcannnnnnncatcaatgtaaaacgaatacgtgtatcttactatgc--atatatttgca |
194 |
Q |
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| T |
5742200 |
ataacataacattattaacatactctcgaaatgaacctctttcatttttttcatcaatgtaaaacgaatacgtgtatcttactatgcatatatatttgca |
5742299 |
T |
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| Q |
195 |
agtgaattttcttctcttttcttttctcaaatgct |
229 |
Q |
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| T |
5742300 |
agtgaattttcttctcttttcttttctcaaatgct |
5742334 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 28410803 - 28410737
Alignment:
| Q |
37 |
gtccatatatttaacctcttactattaatcaggtctttacattttaaaaagttacaatgaatttggt |
103 |
Q |
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| T |
28410803 |
gtccctatatttaaccactaactatcaatcaggtctctatattttaacaagttactatcaatttggt |
28410737 |
T |
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