View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_26 (Length: 228)
Name: NF8959_high_26
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 52515409 - 52515215
Alignment:
| Q |
14 |
cagagatgaaaaagagagatcctgctcacccaaaaccaaacagaagtggatacaatttcttctttgcagaacaacatccaaggctaaaacctcttcaccg |
113 |
Q |
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| T |
52515409 |
cagagatgaaaaagagagatcctgctcacccaaaaccaaacagaagtggatacaatttcttctttgcagaacaacatccaaggctaaaacctcttcaccg |
52515310 |
T |
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| Q |
114 |
agggaaggatcgagagattagtaggaccattggtgaactctggaacaagttacctgaatcagaaaaagcagtaaggaatttgtttaacacatctt |
208 |
Q |
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| T |
52515309 |
agggaaggaccgagaaattagtaggaccattggtgaactctggaacaagttacctgaatcagaaaaagcagtaaggaatttgtttaacacatctt |
52515215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 438109 - 438188
Alignment:
| Q |
22 |
aaaaagagagatcctgctcacccaaaaccaaacagaagtggatacaatttcttctttgcagaacaacatccaaggctaaa |
101 |
Q |
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|||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || || ||| |||| ||||| |
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| T |
438109 |
aaaaggagagatcctgctcatccaaaacccaacagaagtggttacaatttcttctttgctgagcagcatgcaagactaaa |
438188 |
T |
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