View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_3 (Length: 718)
Name: NF8959_high_3
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_3 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 20 - 696
Target Start/End: Original strand, 3096136 - 3096820
Alignment:
| Q |
20 |
atcaaatgggacaatttcttctgtggaccgttacttgaaaattgttcnnnnnnnccgatgacgacagaggtgccaccttccagaagtagaattttactgt |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3096136 |
atcaaatgggacaatttcttctgtggaccgttgcttgaaaattgttcaaaaacactgatgacgacagaggtgccaccttccagaagtagcattttactgt |
3096235 |
T |
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| Q |
120 |
cctcttcgtcctcgtgactaagaaggtgacttgatcattgccagtttgacaaaaacaaacgaaaacaaatatgagctgagttttgaggcacgcaaattta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3096236 |
cctcttcgtcctcgtgactaagaaggtgacttgatcattgccggtttgacaaaaacaaacgaaaacaaatatgagctgagttttgaggcacgcaaattta |
3096335 |
T |
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| Q |
220 |
ttttctattgttgtttccaaattgacatcaatcatagcactttctcagacgttgcaataaggaggacaataaacttctacttccaaagattggagtcagt |
319 |
Q |
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| T |
3096336 |
ttttctattgttgtttccaaattgacatcaatcatagcactttctcaggcgttgcaataaggaggacaataaacttctacttccaaagattggagtcagt |
3096435 |
T |
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| Q |
320 |
catctttggagtttc--------ttcaagtacttgtccgcagtgatccactgtcgaatttgtcatcaaattactcatattttatattggttttgtataat |
411 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3096436 |
catctttggagtttcagacagttttcaagtacttgtccgcagtgatccactgtcgaatttgtcatcaagttactcatattttatattggttttgtataat |
3096535 |
T |
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| Q |
412 |
atgtctggttatcagcttcgttcaccttatgggaacaaaaaccactttggtgatcgtgtggcttctggtaatttcgcatttactacagctgaagctggtg |
511 |
Q |
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| T |
3096536 |
atgtctggttatcagcttcgttcaccttatgggaacaaacaccactttggtgatcgtgtggcttctggtaatttcgcatttactacagctgaagctggtg |
3096635 |
T |
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| Q |
512 |
actacacagcttgtttttccgtgccggatcagaaacccacaataactgtgaccattgattttgagtggagaactggggtggctgccaaggactggtataa |
611 |
Q |
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| T |
3096636 |
actacacagcttgtttttccgtgccggatcagaaacccacaataactgtgaccattgattttgagtggagaactggggtggctgccaaggactggtataa |
3096735 |
T |
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| Q |
612 |
gattgcnnnnnnngatcagattgacgtaagtcttagtagtatagtactgtaatgtttgttgacatagcatcgagatgtgcatgat |
696 |
Q |
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| T |
3096736 |
gattgcaaaaaaagatcagattgacgtaagtcttagtagaatagtagtgtaatgtttgttgacatagcatcgagatgtgcatgat |
3096820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 1077 - 1022
Alignment:
| Q |
170 |
aaaaacaaacgaaaacaaatatgagctgagttttgaggcacgcaaatttattttct |
225 |
Q |
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| T |
1077 |
aaaaacaaagggaaacaaatatgagctgaattttgaggcacacatatatattttct |
1022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 4955089 - 4955034
Alignment:
| Q |
170 |
aaaaacaaacgaaaacaaatatgagctgagttttgaggcacgcaaatttattttct |
225 |
Q |
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| T |
4955089 |
aaaaacaaagggaaacaaatatgagctgaattttgaggcacacatatatattttct |
4955034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 31557300 - 31557227
Alignment:
| Q |
181 |
aaaacaaatatgagctgagttttgaggcacgcaaatttattttctattgttgtttccaaattgacatcaatcat |
254 |
Q |
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| T |
31557300 |
aaaacaaatatgagttgatttttgagacacgcatatttgtcttcttttgtttttgccaaattgaaaccaatcat |
31557227 |
T |
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