View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_high_5 (Length: 608)
Name: NF8959_high_5
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 177 - 591
Target Start/End: Complemental strand, 39245668 - 39245239
Alignment:
| Q |
177 |
aatttattactctaacaagtttattttaatacctttgatttttgttaaaaagtttttataataagagactggggagagagtgcatagacacacacattta |
276 |
Q |
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| T |
39245668 |
aatttattactctaacaagtttcttttaatacctttgatttttgttaaaaagtttctataataagagactggggagagagtacatagacagacacattta |
39245569 |
T |
|
| Q |
277 |
ttcttaactttcaataaatattcccaatttaattaaccatgc---------------ctttgaattataccacttacacactcattattttaagtgccga |
361 |
Q |
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| T |
39245568 |
ttcttaactttcgataaatattcccaatttaattaaccatgctttaattaaccatgcctttgaattatatcacttacacactcgtttttttaagtgccga |
39245469 |
T |
|
| Q |
362 |
aatcacaagaccccaactattccaactaaatagctacaaagtctggaccccaatgaacataatggaaaataaagtgaacattattcaaccacctaaaaaa |
461 |
Q |
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| T |
39245468 |
aatcacaagaccccaactattccaactaaatagctacaaagtctggaccccaatgaacataatggaaaataaagtgaacattattcaaccacctaaaaaa |
39245369 |
T |
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| Q |
462 |
ctcatcctatatccaaaaaataaacatgtgtttacggtgattttggttagttgtgaagtgtgtcaagcataccacaaacagatgtttatttagtgtggtc |
561 |
Q |
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| T |
39245368 |
ctcatcctatatccaaaaaataaacatgtgtttacggtgattttggttagttgtgaagtgtgtcaagcataccacaaacagatgtttatttagtgtggtc |
39245269 |
T |
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| Q |
562 |
atgagattttgttggaatactagtcaaaat |
591 |
Q |
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| T |
39245268 |
atgagattttgttggaatactagtcaaaat |
39245239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 39246156 - 39245979
Alignment:
| Q |
8 |
gaaaactaatttggccaatcaaaattattgctctgcggaatacacagaaaaccaagggaatatacgttccaaccaaaatatatcagcttttcctcgagat |
107 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39246156 |
gaaaactaatttggccaatcaaaattgttgctctacggaatacacggaaaaccaagggaatatacgttccaaccaaaatatatcagctttttctcgagat |
39246057 |
T |
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| Q |
108 |
aaattcgggccaaattgttcgctatgaatagtattttccatttattaatagtcagacacatttctcacaaatttatta |
185 |
Q |
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| T |
39246056 |
aaattcgggccaaattgttcgctatgaatagtattttccatttattaatagtcagacatatttctcacaaatttatta |
39245979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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