View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8959_high_9 (Length: 488)

Name: NF8959_high_9
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8959_high_9
NF8959_high_9
[»] chr2 (1 HSPs)
chr2 (14-471)||(25078411-25078871)
[»] chr8 (2 HSPs)
chr8 (45-218)||(3185609-3185786)
chr8 (46-127)||(14242772-14242853)
[»] chr1 (1 HSPs)
chr1 (49-170)||(25009324-25009445)
[»] chr6 (2 HSPs)
chr6 (76-127)||(29659180-29659231)
chr6 (75-141)||(5959763-5959829)
[»] chr5 (1 HSPs)
chr5 (48-143)||(28144337-28144432)
[»] scaffold0123 (1 HSPs)
scaffold0123 (48-120)||(43766-43838)
[»] chr7 (3 HSPs)
chr7 (74-169)||(17759059-17759154)
chr7 (77-122)||(20306494-20306539)
chr7 (70-122)||(38709371-38709423)
[»] chr3 (3 HSPs)
chr3 (134-180)||(28438171-28438217)
chr3 (73-122)||(21894051-21894100)
chr3 (76-125)||(43461146-43461195)


Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 25078871 - 25078411
Alignment:
Q  14 ttattcttacaagccgatattttgaccattggaagtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctct 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25078871 ttattcttacaagccgatattttgatcattggaagtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatccacgagtgtctct 25078772  T
Q  114 tttattagtcatttcagtcatcgaatctatctttaagtagtcaatttagtcctcaaacttgttttccgtctgacaatatagtccataaaattgctaacaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25078771 tttattagtcatttcagtcatcgaatctatctttaagtagtcgatttagtcctcaaacttgttttccgtctgacaatatagtccataaaattgctaacaa 25078672  T
Q  214 aagagatgtatttacaatttcgatacatttatagaccgtaa-aacaatgcaccacatattcaaggaga------gttgtttgtcaaattttatttacttc 306  Q
    ||||||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||| || |      |||||||||| |||||||||||||||    
T  25078671 aagagatgtatttacaatttcgatacattcatagaccataatgacaatgcaccacatattcaacgacaaaaattgttgtttgtccaattttatttacttc 25078572  T
Q  307 ccaatgtgacagactataaagcagcgacaaacaccaaacataacactaatatacggatgatttcttaagaaaatagaaatgattgaatgaaattactagt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||    
T  25078571 ccaatgtgacagactataaagcagcgacaaacaccaaacataacactaatgtacggatgattacttaagaaaatagaaatgattgaataaaattacgagt 25078472  T
Q  407 gttggggtcatgttcctctccgacacaccgtgttacatacaaatactgatgtcttgtttactttt 471  Q
    ||||||||||||||||||| || ||||||||||    |||||||| |||||||||||||||||||    
T  25078471 gttggggtcatgttcctctacgccacaccgtgt----tacaaatattgatgtcttgtttactttt 25078411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 3185609 - 3185786
Alignment:
Q  45 gaagtgtaactcgttatcacattgtttcttgaatgtatcgaa-----attgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaat 139  Q
    ||||||||||||| | |||||||| | |||||||||||| ||     ||| |||||||||| || ||||||||||| |||||||||||||||  ||||||    
T  3185609 gaagtgtaactcgctgtcacattggtccttgaatgtatcaaatcaaaattacaaacacatccacaagtgtctctttcattagtcatttcagttctcgaat 3185708  T
Q  140 ctatctttaagtagtcaatttagtcctcaaacttgttttccgtctgacaatatagtccataaaattgctaacaaaagag 218  Q
     | | |||| ||||||  ||| |||||| ||  |||||| ||| || |||| |||||||||||||| |||||| |||||    
T  3185709 atgtttttaggtagtc-gttttgtcctcgaatgtgtttttcgtttgtcaatttagtccataaaatttctaacagaagag 3185786  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 14242853 - 14242772
Alignment:
Q  46 aagtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcattt 127  Q
    |||||||||||| | |||||||| ||| |||||||| | ||| || ||||||||| ||  ||||||||||||||||||||||    
T  14242853 aagtgtaactcgctgtcacattggttcctgaatgtaccaaaaatgtaaacacatccacatgtgtctcttttattagtcattt 14242772  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 25009445 - 25009324
Alignment:
Q  49 tgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatctatcttta 148  Q
    |||||||| || |||||||| || || | |||||| ||||| |||||||||| || ||| ||| |||||||||||||||   ||||| ||| ||| ||||    
T  25009445 tgtaactcattctcacattggttttttattgtatcaaaattacaaacacatctacaagtatcttttttattagtcattttgctcatcaaatatattttta 25009346  T
Q  149 agtagtcaatttagtcctcaaa 170  Q
     |||||||||||||||||||||    
T  25009345 ggtagtcaatttagtcctcaaa 25009324  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 29659180 - 29659231
Alignment:
Q  76 aatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcattt 127  Q
    |||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  29659180 aatgtatcaaaattgcaaacacatccactagtgtctcttttattagtcattt 29659231  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 5959829 - 5959763
Alignment:
Q  75 gaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatct 141  Q
    |||||||||||||||||||| ||||| || | |||||||||||| ||| ||||  ||| ||||||||    
T  5959829 gaatgtatcgaaattgcaaatacatccacaaatgtctcttttatcagttattttggtcctcgaatct 5959763  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 28144432 - 28144337
Alignment:
Q  48 gtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatctat 143  Q
    |||||||||||  |||||||| | | | |||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||| ||| | ||||||||    
T  28144432 gtgtaactcgtagtcacattgatacctaaatgaatcaaaattgcaaacacatccacgcgtgtctcttttatcagtcatttcggtccttgaatctat 28144337  T

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Target: scaffold0123 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 43838 - 43766
Alignment:
Q  48 gtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttatta 120  Q
    |||||||| ||| |||||||| | ||||||| ||||||||||||||||||||  |||||||||| ||| ||||    
T  43838 gtgtaactggttgtcacattggtccttgaatctatcgaaattgcaaacacattcacgagtgtctttttaatta 43766  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 17759059 - 17759154
Alignment:
Q  74 tgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatctatctttaagtagtcaatttagtcctcaa 169  Q
    |||||||||| |||||||||| ||||  |  ||||||| |||||||||| ||||  ||||| ||||   | ||||| |||||||||||||||||||    
T  17759059 tgaatgtatcaaaattgcaaagacattcataagtgtctgttttattagttattttggtcattgaattcgtttttaaatagtcaatttagtcctcaa 17759154  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 20306494 - 20306539
Alignment:
Q  77 atgtatcgaaattgcaaacacatcgacgagtgtctcttttattagt 122  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||    
T  20306494 atgtatcgaaattgcaaatacattcacgtgtgtctcttttattagt 20306539  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 38709371 - 38709423
Alignment:
Q  70 ttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagt 122  Q
    |||||||||| |||||||||||||||| ||  || ||| ||||||||||||||    
T  38709371 ttcttgaatgcatcgaaattgcaaacatattcacaagtatctcttttattagt 38709423  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 28438217 - 28438171
Alignment:
Q  134 tcgaatctatctttaagtagtcaatttagtcctcaaacttgttttcc 180  Q
    |||||||||| |||| |||||||||||||||||||||  ||||||||    
T  28438217 tcgaatctatttttaggtagtcaatttagtcctcaaatatgttttcc 28438171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 21894100 - 21894051
Alignment:
Q  73 ttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagt 122  Q
    ||||||||||||||||||||||  |||  ||| |||||||||||||||||    
T  21894100 ttgaatgtatcgaaattgcaaatgcattcacgtgtgtctcttttattagt 21894051  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 43461146 - 43461195
Alignment:
Q  76 aatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcat 125  Q
    |||||||| |||||||||||||||| || || ||||| ||||||||||||    
T  43461146 aatgtatcaaaattgcaaacacatccacaagcgtctcatttattagtcat 43461195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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