View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_11 (Length: 560)
Name: NF8959_low_11
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 28 - 541
Target Start/End: Original strand, 521162 - 521679
Alignment:
| Q |
28 |
ccagtgtcaacattcaataataatatgcttaccttaattcagttttctatcagaatctttggcaacttcattgnnnnnnnnn--attatttatatttaat |
125 |
Q |
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| T |
521162 |
ccagtgtgaacattcaataataatatgcttaccttatttcagttttctatcagaatctttggcaacttcattgtttttttttttattatatatatttaat |
521261 |
T |
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| Q |
126 |
taacttgaactgatccttgttgatagagctgatgctgcttgggcttatctctttgttgttggcacaaagcgcgagatggatctctgaaatttgtgtaaat |
225 |
Q |
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| T |
521262 |
taacttgaactgatccttgttgatagagctgatgctgcttgggcttatctctttgttgttggcacaaagcgcgagatggatctctgaaatttgtgtaaat |
521361 |
T |
|
| Q |
226 |
tcatcacttttcagcagtcgattctatacctgctctgaacaagaccttcccatgattgagcatgtcatgattgtaaactcttcatctttctctgatgaaa |
325 |
Q |
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| T |
521362 |
tcatcacttttcagcagtcgattctatacctgctctgaacaagaccttcccatgattgagcatgtcatgattgtaaactcttcatctttctctgatgaaa |
521461 |
T |
|
| Q |
326 |
ctactattcctaaggggctatatagtggtgcactccatcaatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgt--tatcttgtgtt |
423 |
Q |
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| T |
521462 |
ctactattcctaaggggctatatagtggtgcactccatcaatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttatatcttgtgtt |
521561 |
T |
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| Q |
424 |
gaaaaaactgagattaaatgctgtttctttgcaacactacaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatat |
523 |
Q |
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| T |
521562 |
gaaaaaactgagattaaatgctgtttctttgcaacactacaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatat |
521661 |
T |
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| Q |
524 |
gaaggtcttgaacagctg |
541 |
Q |
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| T |
521662 |
gaaggtcttgaacagctg |
521679 |
T |
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