View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_13 (Length: 500)
Name: NF8959_low_13
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 6189281 - 6189380
Alignment:
| Q |
259 |
tatttcacttgaatgaggtatataattattattgatcatcactaggtatttatacacttgcacaaatccacacacaattggatctcaaccaaaagggttg |
358 |
Q |
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| T |
6189281 |
tatttcacttgaatgaggtatataattattattgatcatcactaggtatttatacacttgcacaaatccacacacaattggatctcaaccaaaagggttg |
6189380 |
T |
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Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 6189073 - 6189170
Alignment:
| Q |
1 |
catgtaatattgattatagaactaacttgtcacggtagatgtaggagatgccaacggtttaactcatatgttacagaataatgcttacaagataatgc |
98 |
Q |
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| T |
6189073 |
catgtaatattgattatagaactaacttgtcacagtagatgtaggagatgccaacggtttaactcatatgttacagaataatgcttacaagataatgc |
6189170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 401 - 483
Target Start/End: Original strand, 6189423 - 6189505
Alignment:
| Q |
401 |
tggttacttgcacgtcaagtcatcgactctaactaacttgaattgctcatttctcaacataccaccttaattcatgttagtca |
483 |
Q |
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| T |
6189423 |
tggttacttgcacgtcaagtcatcgactctaactaacttgaattgctcatttctcaacataccaccttaattcatgttagtca |
6189505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 6189151 - 6189225
Alignment:
| Q |
129 |
taatgcttacaagataatgctgtgtctgttggaacaacacaattcttgattgcgcgcatacacacacggggtgtt |
203 |
Q |
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| T |
6189151 |
taatgcttacaagataatgctgtgtctgttagaacaacacaattcttgattgtgcgcatacacacacggtgtgtt |
6189225 |
T |
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