View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_19 (Length: 465)
Name: NF8959_low_19
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 52251049 - 52250611
Alignment:
| Q |
1 |
tgtatcagagagctatggaagggaatttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatca |
100 |
Q |
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| T |
52251049 |
tgtatcagagagctatgacagggaatttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttatacacatca |
52250950 |
T |
|
| Q |
101 |
gaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgt |
200 |
Q |
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| T |
52250949 |
gaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgt |
52250850 |
T |
|
| Q |
201 |
ttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatgg |
300 |
Q |
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| T |
52250849 |
ttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatgg |
52250750 |
T |
|
| Q |
301 |
atcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctagggataatattgctcatga |
400 |
Q |
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| T |
52250749 |
atcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctagggataatattgctcatga |
52250650 |
T |
|
| Q |
401 |
tttgttgcatcgtggtcgtgttggcaatacttttttata |
439 |
Q |
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| T |
52250649 |
tttgttgcatcgtggtcgtgttggcaatacttttttata |
52250611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 393
Target Start/End: Complemental strand, 52262667 - 52262300
Alignment:
| Q |
25 |
atttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgc |
124 |
Q |
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||||||||||| ||||||||| ||||||| |||||| ||| || ||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
52262667 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
52262568 |
T |
|
| Q |
125 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
224 |
Q |
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| T |
52262567 |
gtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaa |
52262468 |
T |
|
| Q |
225 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaacttt |
324 |
Q |
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| T |
52262467 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggat-ctggatggaattttgaattgt |
52262369 |
T |
|
| Q |
325 |
ttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctagggataatattg |
393 |
Q |
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| T |
52262368 |
ttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggataatattg |
52262300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 3698867 - 3698992
Alignment:
| Q |
181 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
280 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| | | || ||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
3698867 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtga |
3698966 |
T |
|
| Q |
281 |
aatgaggaatgagaagatggatcctg |
306 |
Q |
| |
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|||| |||||| |||||||||| |
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| T |
3698967 |
gatgaaaggtgagaaaatggatcctg |
3698992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 3702555 - 3702680
Alignment:
| Q |
181 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
280 |
Q |
| |
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||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
3702555 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
3702654 |
T |
|
| Q |
281 |
aatgaggaatgagaagatggatcctg |
306 |
Q |
| |
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|||| |||||| |||||||||| |
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| T |
3702655 |
gatgaaaggtgagaaaatggatcctg |
3702680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 17602848 - 17602953
Alignment:
| Q |
237 |
cctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatgaaa |
336 |
Q |
| |
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|||| ||||||||||||||||||||| | |||||||||||||| || | |||||| | |||||| || |||||| ||||| ||||||||||||||| |
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| T |
17602848 |
cctgttgttcttggtgcttgttgtgtgcttcataatatttgtgagattatgaatgaagaaatggatgatgaatggaagtttgaggtttttgatgatgaaa |
17602947 |
T |
|
| Q |
337 |
tggttg |
342 |
Q |
| |
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|||||| |
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| T |
17602948 |
tggttg |
17602953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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