View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8959_low_20 (Length: 461)
Name: NF8959_low_20
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 15307581 - 15308007
Alignment:
| Q |
19 |
tctttgaacagttcatgcctcatatgatgaaaggaggaaggcatatcttcgcccgctttgcggttatattttcggtgataatcgtatgggtttatgctat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15307581 |
tctttgaacagttcatgcctcatatgatgaaaggaggaaggcatatcttcgcccgctttgcggttatattttcggtgataatcgtatgggtttatgctat |
15307680 |
T |
|
| Q |
119 |
tattctaactggttgcggagcttataaaaacgcacaacatgagactcaggatacttgcagaactgaccgtgctggactcatacatggtgcatcttggtaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15307681 |
tattctaactggttgcggagcttataaaaacgcagaacatgagactcaggatacttgcagaactgaccgtgctggactcatacatggtgcatcttggtaa |
15307780 |
T |
|
| Q |
219 |
gagtcttgtgaatgtttattccgtactttaggtagtggtatattttagagaacacggtcgatgaaacttgttattttctatatctttaatgactagaaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15307781 |
gagtcttgtgaatgtttattccgtactttaggtagtggtatattttagagaacacggtcgattaaacttgttattttctatatctttaatgactagaaaa |
15307880 |
T |
|
| Q |
319 |
atggattcagttttggttaattcctaactatttattttgataaaatatattaaccaggattagcgctccaattcctttccgttggggagctccaacattt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15307881 |
atggattcagttttggttaattcctaactatttattttgataaaatatattaaccaggattagccctccaattcctttccgttggggagctccaacattt |
15307980 |
T |
|
| Q |
419 |
gatgctggagaagctttcgctatgatg |
445 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15307981 |
gatgctggagaagctttcgctatgatg |
15308007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 26473593 - 26473549
Alignment:
| Q |
401 |
tggggagctccaacatttgatgctggagaagctttcgctatgatg |
445 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
26473593 |
tggggagctccaacatttgatgctggcgaaacttttgctatgatg |
26473549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University