View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8959_low_24 (Length: 406)

Name: NF8959_low_24
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8959_low_24
NF8959_low_24
[»] chr2 (3 HSPs)
chr2 (15-390)||(34218587-34218962)
chr2 (15-390)||(34192689-34193064)
chr2 (15-285)||(34207445-34207715)
[»] chr4 (5 HSPs)
chr4 (101-172)||(31701976-31702047)
chr4 (98-150)||(31724519-31724571)
chr4 (101-147)||(31732687-31732733)
chr4 (101-147)||(31740253-31740299)
chr4 (101-147)||(31745588-31745634)
[»] chr3 (6 HSPs)
chr3 (42-245)||(5849782-5849985)
chr3 (192-245)||(5489149-5489202)
chr3 (192-245)||(5501998-5502051)
chr3 (192-245)||(5803505-5803558)
chr3 (192-245)||(20342700-20342753)
chr3 (80-156)||(5854987-5855063)
[»] chr8 (3 HSPs)
chr8 (131-177)||(19347864-19347910)
chr8 (192-244)||(23392932-23392984)
chr8 (107-171)||(23560869-23560933)
[»] chr6 (1 HSPs)
chr6 (47-245)||(25810241-25810439)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 34218587 - 34218962
Alignment:
Q  15 ataatgatcgtcagggtaacttggaaaatggacaagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34218587 ataatgatcgtcagggtaacttggaaaatggacaagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagt 34218686  T
Q  115 taagctaattgcaaatcttcagcacagaaatcttgtgaaactaattggctgttgcattcatgatgatgagaaactactgatatatgaattcatgatcaac 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34218687 taagctaattgcgaatcttcagcacagaaatcttgtgaaactaatcggctgttgcattcatgatgatgagagactactgatatatgaattcatgatcaac 34218786  T
Q  215 agaagcttggactacttcatttttggtttgagattttatattctatatcatttgttttgattttctttaccctgatcaaaaagtttccctcttctaacta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34218787 agaagcttggactacttcatttttggtttgagattttatattctatatcatttgttttgattttctttaccatgatcaaaaagtttccctcttctaacta 34218886  T
Q  315 agccgaaaactttcataatcagatcaaactaggagaagtttactgcattggactcaacgattccaagttatctgtg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34218887 agccgaaaactttcataatcagatcaaactaggagaagtttactgcattggactcaacgattccaaattatctgtg 34218962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 34193064 - 34192689
Alignment:
Q  15 ataatgatcgtcagggtaacttggaaaatggacaagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagt 114  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  34193064 ataatgattgttagggtaaattggaaaatggacaagatatagctgtgaagaggctttgcaatacttcaggacaaggaccaaaagagttcataaatgaagt 34192965  T
Q  115 taagctaattgcaaatcttcagcacagaaatcttgtgaaactaattggctgttgcattcatgatgatgagaaactactgatatatgaattcatgatcaac 214  Q
    |||||||||||| |||||||||||  ||||||| || || ||| |||| |||||| ||||  | |||||||||||  |||||||||||||||||||||||    
T  34192964 taagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaaaacgatgagaaactcttgatatatgaattcatgatcaac 34192865  T
Q  215 agaagcttggactacttcatttttggtttgagattttatattctatatcatttgttttgattttctttaccctgatcaaaaagtttccctcttctaacta 314  Q
    |||||| ||||||||||||||||||||| |||| ||  |  | || |||||||||||||||||| | |||| |||||||   |||| | |||||||||||    
T  34192864 agaagcctggactacttcatttttggttggagaattattcctatacatcatttgttttgattttatgtaccttgatcaatttgttt-cttcttctaacta 34192766  T
Q  315 agccgaaaac-tttcataatcagatcaaactaggagaagtttactgcattggactcaacgattccaagttatctgtg 390  Q
    ||||| |||| ||| || ||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| ||||    
T  34192765 agccggaaactttttattatcagatcaaactagaaaaagtttactgaattggactcgacgattccaagttatttgtg 34192689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 34207445 - 34207715
Alignment:
Q  15 ataatgatcgtcagggtaacttggaaaatggacaagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagt 114  Q
    |||||||| || ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||   ||||| ||||| || ||||||||||||||    
T  34207445 ataatgatggttagggtaaattggaaaatggacaagatatagcagtgaagaggctctgcaatacttcatcgcaagggccaaaagagttcataaatgaagt 34207544  T
Q  115 taagctaattgcaaatcttcagcacagaaatcttgtgaaactaattggctgttgcattcatgatgatgagaaactactgatatatgaattcatgatcaac 214  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||   || |||| |||  ||||||||||||||||||| |||    
T  34207545 taagctaattgcgaatcttcagcacagaaatcttgtgaaactacttggctgttgcattcatctggacgagagactcttgatatatgaattcatgataaac 34207644  T
Q  215 agaagcttggactacttcatttttggtttgagattttatattctatatcatttgttttgattttctttacc 285  Q
    ||||||||||||||||||||||||||||||| |||||||  | ||||| | ||||||||||||||| ||||    
T  34207645 agaagcttggactacttcatttttggtttgaaattttatcctatatattacttgttttgattttctgtacc 34207715  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 31701976 - 31702047
Alignment:
Q  101 ttcataaatgaagttaagctaattgcaaatcttcagcacagaaatcttgtgaaactaattggctgttgcatt 172  Q
    |||||||||||||| || || ||||||||| |||||||| |||||||||| || || |||||||||||||||    
T  31701976 ttcataaatgaagtaaaacttattgcaaatgttcagcaccgaaatcttgtaaagcttattggctgttgcatt 31702047  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 31724519 - 31724571
Alignment:
Q  98 gaattcataaatgaagttaagctaattgcaaatcttcagcacagaaatcttgt 150  Q
    ||||||||||||||||| || || ||||||||| |||||||| ||||||||||    
T  31724519 gaattcataaatgaagtaaaacttattgcaaatgttcagcaccgaaatcttgt 31724571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 31732687 - 31732733
Alignment:
Q  101 ttcataaatgaagttaagctaattgcaaatcttcagcacagaaatct 147  Q
    |||||||||||||| |||||||||||||| ||||| ||| |||||||    
T  31732687 ttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatct 31732733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 31740253 - 31740299
Alignment:
Q  101 ttcataaatgaagttaagctaattgcaaatcttcagcacagaaatct 147  Q
    |||||||||||||| |||||||||||||| ||||| ||| |||||||    
T  31740253 ttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatct 31740299  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 31745588 - 31745634
Alignment:
Q  101 ttcataaatgaagttaagctaattgcaaatcttcagcacagaaatct 147  Q
    |||||||||||||| |||||||||||||| ||||| ||| |||||||    
T  31745588 ttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatct 31745634  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 5849782 - 5849985
Alignment:
Q  42 atggacaagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagttaagctaattgcaaatcttcagcacag 141  Q
    |||| ||||| || ||||| || |||||||| ||||| || |||||||||    |||| |||| ||||||||| ||| | || ||||  ||||| ||| |    
T  5849782 atggccaagagattgctgttaagaggctttgtaatacatcgggacaaggagttgaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccg 5849881  T
Q  142 aaatcttgtgaaactaattggctgttgcattcatgatgatgagaaactactgatatatgaattcatgatcaacagaagcttggactacttcatttttggt 241  Q
     |||||||| |||||  |||| ||||  |||||  | ||||| ||  |  |||| ||||||||||||  ||||||||||||||| ||||| |||||||||    
T  5849882 taatcttgtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctatgaattcatgcccaacagaagcttggattactttatttttggt 5849981  T
Q  242 ttga 245  Q
    ||||    
T  5849982 ttga 5849985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 5489202 - 5489149
Alignment:
Q  192 tgatatatgaattcatgatcaacagaagcttggactacttcatttttggtttga 245  Q
    |||| ||||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  5489202 tgatctatgaattcatggccaacagaagcttggattactttatttttggtttga 5489149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 5502051 - 5501998
Alignment:
Q  192 tgatatatgaattcatgatcaacagaagcttggactacttcatttttggtttga 245  Q
    |||| ||||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  5502051 tgatctatgaattcatggccaacagaagcttggattactttatttttggtttga 5501998  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 5803505 - 5803558
Alignment:
Q  192 tgatatatgaattcatgatcaacagaagcttggactacttcatttttggtttga 245  Q
    |||| ||||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  5803505 tgatctatgaattcatgcccaacagaagcttggattactttatttttggtttga 5803558  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 20342753 - 20342700
Alignment:
Q  192 tgatatatgaattcatgatcaacagaagcttggactacttcatttttggtttga 245  Q
    |||| ||||||||||||  ||||||||||||||| | ||| |||||||||||||    
T  20342753 tgatctatgaattcatgcccaacagaagcttggatttctttatttttggtttga 20342700  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 5854987 - 5855063
Alignment:
Q  80 tcaggacaaggaccaaaggaattcataaatgaagttaagctaattgcaaatcttcagcacagaaatcttgtgaaact 156  Q
    |||||||||||| |  |||| |||| ||||||||| ||| | || ||||  |||||||||||||||||||| |||||    
T  5854987 tcaggacaaggaaccgaggagttcaaaaatgaagtgaagttgatggcaacacttcagcacagaaatcttgtaaaact 5855063  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 19347864 - 19347910
Alignment:
Q  131 cttcagcacagaaatcttgtgaaactaattggctgttgcattcatga 177  Q
    ||||||||||||||||||||  ||||| |||| ||||||||||||||    
T  19347864 cttcagcacagaaatcttgtagaactacttggttgttgcattcatga 19347910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 23392932 - 23392984
Alignment:
Q  192 tgatatatgaattcatgatcaacagaagcttggactacttcatttttggtttg 244  Q
    |||||||||||| ||||  ||||| |||||| ||||||||||| |||||||||    
T  23392932 tgatatatgaatacatgcccaacaaaagcttagactacttcatctttggtttg 23392984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 23560933 - 23560869
Alignment:
Q  107 aatgaagttaagctaattgcaaatcttcagcacagaaatcttgtgaaactaattggctgttgcat 171  Q
    |||||||| || || || ||||| ||||| |||||||||||||| |||||  |||||||||||||    
T  23560933 aatgaagtaaaacttatagcaaaacttcaacacagaaatcttgttaaacttcttggctgttgcat 23560869  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 25810241 - 25810439
Alignment:
Q  47 caagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagttaagctaattgcaaatcttcagcacagaaatc 146  Q
    ||||| || ||||| || |||||||  || || |||||||||||| |  |||| |||| ||||||||| ||| | || ||||  ||||| ||| | ||||    
T  25810241 caagagattgctgttaagaggctttctaaaacatcaggacaaggaactgaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatc 25810340  T
Q  147 ttgtgaaactaattggctgttgcattcatgatgatgagaaactactgatatatgaattcatgatcaacagaagcttggactacttcatttttggtttga 245  Q
    |||| |||||  |||| ||||  |||||  | ||||| ||  |  |||| || |||||||||  ||||||||||||||| ||||| |||||||||||||    
T  25810341 ttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttgatctaagaattcatgcccaacagaagcttggattactttatttttggtttga 25810439  T

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